Differences

This shows you the differences between two versions of the page.

--- list-of-software [2021/01/17 10:23] – aorth
+++ list-of-software [2021/03/17 13:20] – aorth
@@ Line 30: / Line 30: @@
 |bayescan|2.1|''module load bayescan/2.1''| |
 |[[bbmap-software|bbmap]]|38.67|''module load bbmap/38.67''| |
-|[[bcftools-software|bcftools]]|1.8|''module load bcftools/1.8''| |
+|[[bcftools-software|bcftools]]|1.11|''module load bcftools/1.11''| |
 |[[beagle-software|beagle]]|3.1.2|''module load beagle/3.1.2''| |
 |[[beast-software|beast]]|1.10.4|''module load beast/1.10.4''| |
@@ Line 51: / Line 51: @@
 |[[canu-software|canu]]|1.8|''module load canu/1.8''| |
 |cap3|latest|''module load cap3/latest''| |
-|[[cd-hit-software|cd-hit]]|4.6.8|''module load cd-hit/4.6.8''| |
+|[[cd-hit-software|cd-hit]]|4.8.1|''module load cd-hit/4.8.1''| |
 |[[cegma-software|cegma]]|v2.5|''module load cegma/v2.5''| |
 |celera-wgs|6.1|''module load celera-wgs/6.1''| |
@@ Line 140: / Line 140: @@
 |jMHC|1.5.0929|''module load jMHC/1.5.0929''| |
 |[[juicebox-software|juicebox]]|1.11.08|''module load juicebox/1.11.08''| |
+|[[juicer-software|juicer]]|1.6|''module load juicer/1.6''| |
 |[[kaiju-software|kaiju]]|1.4.4|''module load kaiju/1.4.4''| |
 |[[kallisto-software|kallisto]]|0.43.0|''module load kallisto/0.43.0''| |
@@ Line 156: / Line 157: @@
 |[[lordec-software|lordec]]|0.9|''module load lordec/0.9''| |
 |lucy|1.19p|''module load lucy/1.19p''| |
-|[[mafft-software|mafft]]|7.313|''module load mafft/7.313''| |
+|[[mafft-software|mafft]]|7.475|''module load mafft/7.475''| |
 |[[maker-software|maker]]|3.01.03|''module load maker/3.01.03''| |
 |[[mapsplice-software|mapsplice]]|2.2.0|''module load mapsplice/2.2.0''| |
@@ Line 196: / Line 197: @@
 |[[nanopolish-software|nanopolish]]|0.10.2|''module load nanopolish/0.10.2''| |
 |[[netmhcpan-software|netmhcpan]]|2.8|''module load netmhcpan/2.8''| |
+|[[nextalign-software|nextalign]]|0.1.7|''module load nextalign/0.1.7''| |
+|[[nextclade-software|nextclade]]|0.12.0|''module load nextclade/0.12.0''| |
 |[[nextclip-software|nextclip]]|1.3.1|''module load nextclip/1.3.1''| |
 |[[nextflow-software|nextflow]]|20.04.1|''module load nextflow/20.04.1''| |
@@ Line 246: / Line 249: @@
 |[[r-software|R]]|4.0.3|''module load R/4.0''| |
 |[[racon-software|racon]]|1.3.1|''module load racon/1.3.1''| |
-|[[rmblast-software|rmblast]]|2.10.0|''module load rmblast/2.10.0''| |
+|[[rmblast-software|rmblast]]|2.11.0|''module load rmblast/2.11.0''| |
 |[[rapsearch-software|rapsearch]]|2.22|''module load rapsearch/2.22''| |
 |[[ratt-software|RATT]]|r18|''module load ratt/r18''| |
@@ Line 252: / Line 255: @@
 |[[ray-software|ray]]|2.3.1|''module load ray/2.3.1''| |
 |[[rdp-classifier-software|RDP Classifier]]|2.11|''module load rdp-classifier/2.11''| |
+|[[recon-software|recon]]|1.08|''module load recon/1.08''| |
 |[[repeatmasker-software|repeatmasker]]|4.1.1|''module load repeatmasker/4.1.1''| |
 |[[repseqio-software|repseqio]]|1.3.3|''module load repseqio/1.3.3''| |
@@ Line 325: / Line 329: @@
 |varscan|2.4.2|''module load varscan/2.4.2''| |
 |[[vcflib-software|vcflib]]|git-7f1575e|''module load vcflib/git-7f1575e''| |
-|[[vcftools-software|vcftools]]|0.1.15|''module load vcftools/0.1.15''| |
+|[[vcftools-software|vcftools]]|0.1.16|''module load vcftools/0.1.16''| |
 |[[velvet-software|velvet]]|1.2.10-kmer111|''module load velvet/1.2.10-kmer111''| |
 |[[vep-software|vep]]|92.1|''module load vep/92.1''| |