list-of-software
Differences
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| list-of-software [2020/11/09 09:56] – aorth | list-of-software [2021/03/15 10:16] – aorth | ||
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| |bayescan|2.1|'' | |bayescan|2.1|'' | ||
| |[[bbmap-software|bbmap]]|38.67|'' | |[[bbmap-software|bbmap]]|38.67|'' | ||
| - | |[[bcftools-software|bcftools]]|1.8|'' | + | |[[bcftools-software|bcftools]]|1.11|'' |
| |[[beagle-software|beagle]]|3.1.2|'' | |[[beagle-software|beagle]]|3.1.2|'' | ||
| |[[beast-software|beast]]|1.10.4|'' | |[[beast-software|beast]]|1.10.4|'' | ||
| Line 64: | Line 64: | ||
| |[[cnvnator-software|CNVnator]]|0.3.3|'' | |[[cnvnator-software|CNVnator]]|0.3.3|'' | ||
| |consed|20.0|'' | |consed|20.0|'' | ||
| + | |[[cooler-software|cooler]]|0.8.10|'' | ||
| |[[coperead-software|COPEread]]|1.1.2|'' | |[[coperead-software|COPEread]]|1.1.2|'' | ||
| |[[corset-software|corset]]|1.06|'' | |[[corset-software|corset]]|1.06|'' | ||
| Line 80: | Line 81: | ||
| |[[exabayes-software|exabayes]]|1.4.1|'' | |[[exabayes-software|exabayes]]|1.4.1|'' | ||
| |[[express-software|express]]|1.5.1|'' | |[[express-software|express]]|1.5.1|'' | ||
| + | |[[falcon-phase-software|falcon-phase]]|git-7c50154e|'' | ||
| |[[fastANI-software|fastANI]]|1.3|'' | |[[fastANI-software|fastANI]]|1.3|'' | ||
| |[[fastPHASE-software|fastPHASE]]|1.4.8|'' | |[[fastPHASE-software|fastPHASE]]|1.4.8|'' | ||
| Line 121: | Line 123: | ||
| |[[hisat2-software|hisat2]]|2.1.0|'' | |[[hisat2-software|hisat2]]|2.1.0|'' | ||
| |[[htseq-software|htseq]]|0.9.1|'' | |[[htseq-software|htseq]]|0.9.1|'' | ||
| - | |[[htslib-software|htslib]]|1.9|'' | + | |[[htslib-software|htslib]]|1.11|'' |
| + | |[[hypo-software|hypo]]|1.0.3|'' | ||
| |[[idba-software|idba]]|1.1.2|'' | |[[idba-software|idba]]|1.1.2|'' | ||
| |[[igblast-software|igblast]]|1.10.0|'' | |[[igblast-software|igblast]]|1.10.0|'' | ||
| Line 133: | Line 136: | ||
| |[[interproscan-software|interproscan]]|5.13|'' | |[[interproscan-software|interproscan]]|5.13|'' | ||
| |i-tasser|latest|'' | |i-tasser|latest|'' | ||
| + | |[[ivar-software|ivar]]|1.3|'' | ||
| |[[jellyfish-software|jellyfish]]|2.3.0|'' | |[[jellyfish-software|jellyfish]]|2.3.0|'' | ||
| |jMHC|1.5.0929|'' | |jMHC|1.5.0929|'' | ||
| - | |julia|v0.1.2|'' | + | |[[juicebox-software|juicebox]]|1.11.08|'' |
| + | |[[juicer-software|juicer]]|1.6|'' | ||
| |[[kaiju-software|kaiju]]|1.4.4|'' | |[[kaiju-software|kaiju]]|1.4.4|'' | ||
| |[[kallisto-software|kallisto]]|0.43.0|'' | |[[kallisto-software|kallisto]]|0.43.0|'' | ||
| |[[karect-software|karect]]|1.0|'' | |[[karect-software|karect]]|1.0|'' | ||
| |[[kat-software|kat]]|2.3.4|'' | |[[kat-software|kat]]|2.3.4|'' | ||
| - | |[[kmc-software|kmc]]|3.0.0|'' | + | |[[kmc-software|kmc]]|3.1.1|'' |
| |[[kmergenie-software|kmergenie]]|1.7038|'' | |[[kmergenie-software|kmergenie]]|1.7038|'' | ||
| |[[kmer-ssr-software|kmer-ssr]]|git-4043c0e7|'' | |[[kmer-ssr-software|kmer-ssr]]|git-4043c0e7|'' | ||
| Line 189: | Line 194: | ||
| |[[multiqc-software|multiqc]]|1.6|'' | |[[multiqc-software|multiqc]]|1.6|'' | ||
| |[[muscle-software|muscle]]|3.8.1551|'' | |[[muscle-software|muscle]]|3.8.1551|'' | ||
| - | |[[mummer-software|MUMmer]]|3.23|'' | + | |[[mummer-software|mummer]]|4.0.0rc1|'' |
| |[[nanopolish-software|nanopolish]]|0.10.2|'' | |[[nanopolish-software|nanopolish]]|0.10.2|'' | ||
| |[[netmhcpan-software|netmhcpan]]|2.8|'' | |[[netmhcpan-software|netmhcpan]]|2.8|'' | ||
| + | |[[nextclade-software|nextclade]]|0.12.0|'' | ||
| |[[nextclip-software|nextclip]]|1.3.1|'' | |[[nextclip-software|nextclip]]|1.3.1|'' | ||
| |[[nextflow-software|nextflow]]|20.04.1|'' | |[[nextflow-software|nextflow]]|20.04.1|'' | ||
| Line 240: | Line 246: | ||
| |[[quickmerge-software|quickmerge]]|0.3|'' | |[[quickmerge-software|quickmerge]]|0.3|'' | ||
| |[[quorum-software|Quorum]]|1.1.1|'' | |[[quorum-software|Quorum]]|1.1.1|'' | ||
| - | |[[r-software|R]]|3.6.1|'' | + | |[[r-software|R]]|4.0.3|'' |
| |[[racon-software|racon]]|1.3.1|'' | |[[racon-software|racon]]|1.3.1|'' | ||
| |[[rmblast-software|rmblast]]|2.10.0|'' | |[[rmblast-software|rmblast]]|2.10.0|'' | ||
| Line 255: | Line 261: | ||
| |[[rseqc-software|rseqc]]|2.6.4|'' | |[[rseqc-software|rseqc]]|2.6.4|'' | ||
| |[[ruby-software|ruby]]|2.2.3|'' | |[[ruby-software|ruby]]|2.2.3|'' | ||
| - | |[[samtools-software|samtools]]|1.9|'' | + | |[[samtools-software|samtools]]|1.11|'' |
| |[[sailfish-software|sailfish]]|0.9.2|'' | |[[sailfish-software|sailfish]]|0.9.2|'' | ||
| |[[salmon-software|salmon]]|1.3.0|'' | |[[salmon-software|salmon]]|1.3.0|'' | ||
| + | |[[salsa-software|salsa]]|git-974589f3|'' | ||
| |[[scipio-software|scipio]]|1.4.1|'' | |[[scipio-software|scipio]]|1.4.1|'' | ||
| |[[scythe-software|scythe]]|0.994-beta|'' | |[[scythe-software|scythe]]|0.994-beta|'' | ||
| Line 320: | Line 327: | ||
| |varscan|2.4.2|'' | |varscan|2.4.2|'' | ||
| |[[vcflib-software|vcflib]]|git-7f1575e|'' | |[[vcflib-software|vcflib]]|git-7f1575e|'' | ||
| - | |[[vcftools-software|vcftools]]|0.1.15|'' | + | |[[vcftools-software|vcftools]]|0.1.16|'' |
| |[[velvet-software|velvet]]|1.2.10-kmer111|'' | |[[velvet-software|velvet]]|1.2.10-kmer111|'' | ||
| |[[vep-software|vep]]|92.1|'' | |[[vep-software|vep]]|92.1|'' | ||
list-of-software.txt · Last modified: 2024/06/19 11:50 by aorth