list-of-software
Differences
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| list-of-software [2020/10/28 11:30] – aorth | list-of-software [2021/01/06 15:45] – aorth | ||
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| |[[cnvnator-software|CNVnator]]|0.3.3|'' | |[[cnvnator-software|CNVnator]]|0.3.3|'' | ||
| |consed|20.0|'' | |consed|20.0|'' | ||
| + | |[[cooler-software|cooler]]|0.8.10|'' | ||
| |[[coperead-software|COPEread]]|1.1.2|'' | |[[coperead-software|COPEread]]|1.1.2|'' | ||
| |[[corset-software|corset]]|1.06|'' | |[[corset-software|corset]]|1.06|'' | ||
| Line 80: | Line 81: | ||
| |[[exabayes-software|exabayes]]|1.4.1|'' | |[[exabayes-software|exabayes]]|1.4.1|'' | ||
| |[[express-software|express]]|1.5.1|'' | |[[express-software|express]]|1.5.1|'' | ||
| + | |[[falcon-phase-software|falcon-phase]]|git-7c50154e|'' | ||
| |[[fastANI-software|fastANI]]|1.3|'' | |[[fastANI-software|fastANI]]|1.3|'' | ||
| |[[fastPHASE-software|fastPHASE]]|1.4.8|'' | |[[fastPHASE-software|fastPHASE]]|1.4.8|'' | ||
| Line 100: | Line 102: | ||
| |[[gapfiller-software|gapfiller]]|1.10|'' | |[[gapfiller-software|gapfiller]]|1.10|'' | ||
| |[[geneid-software|geneid]]|1.4.4|'' | |[[geneid-software|geneid]]|1.4.4|'' | ||
| + | |[[genometools-software|genometools]]|1.6.1|'' | ||
| |[[genscan-software|genscan]]|latest|'' | |[[genscan-software|genscan]]|latest|'' | ||
| |[[gffread-software|gffread]]|0.9.6|'' | |[[gffread-software|gffread]]|0.9.6|'' | ||
| Line 117: | Line 120: | ||
| |[[hmmer-software|hmmer]]|3.3|'' | |[[hmmer-software|hmmer]]|3.3|'' | ||
| |[[hpg-variant-software|hpg-variant]]|1.0|'' | |[[hpg-variant-software|hpg-variant]]|1.0|'' | ||
| + | |[[hic_qc-software|hic_qc]]|git-1e132fb2|'' | ||
| |[[hisat2-software|hisat2]]|2.1.0|'' | |[[hisat2-software|hisat2]]|2.1.0|'' | ||
| |[[htseq-software|htseq]]|0.9.1|'' | |[[htseq-software|htseq]]|0.9.1|'' | ||
| - | |[[htslib-software|htslib]]|1.9|'' | + | |[[htslib-software|htslib]]|1.11|'' |
| + | |[[hypo-software|hypo]]|1.0.3|'' | ||
| |[[idba-software|idba]]|1.1.2|'' | |[[idba-software|idba]]|1.1.2|'' | ||
| |[[igblast-software|igblast]]|1.10.0|'' | |[[igblast-software|igblast]]|1.10.0|'' | ||
| Line 133: | Line 138: | ||
| |[[jellyfish-software|jellyfish]]|2.3.0|'' | |[[jellyfish-software|jellyfish]]|2.3.0|'' | ||
| |jMHC|1.5.0929|'' | |jMHC|1.5.0929|'' | ||
| - | |julia|v0.1.2|'' | + | |[[juicebox-software|juicebox]]|1.11.08|'' |
| |[[kaiju-software|kaiju]]|1.4.4|'' | |[[kaiju-software|kaiju]]|1.4.4|'' | ||
| |[[kallisto-software|kallisto]]|0.43.0|'' | |[[kallisto-software|kallisto]]|0.43.0|'' | ||
| |[[karect-software|karect]]|1.0|'' | |[[karect-software|karect]]|1.0|'' | ||
| |[[kat-software|kat]]|2.3.4|'' | |[[kat-software|kat]]|2.3.4|'' | ||
| - | |[[kmc-software|kmc]]|3.0.0|'' | + | |[[kmc-software|kmc]]|3.1.1|'' |
| |[[kmergenie-software|kmergenie]]|1.7038|'' | |[[kmergenie-software|kmergenie]]|1.7038|'' | ||
| |[[kmer-ssr-software|kmer-ssr]]|git-4043c0e7|'' | |[[kmer-ssr-software|kmer-ssr]]|git-4043c0e7|'' | ||
| Line 151: | Line 156: | ||
| |lucy|1.19p|'' | |lucy|1.19p|'' | ||
| |[[mafft-software|mafft]]|7.313|'' | |[[mafft-software|mafft]]|7.313|'' | ||
| + | |[[maker-software|maker]]|3.01.03|'' | ||
| |[[mapsplice-software|mapsplice]]|2.2.0|'' | |[[mapsplice-software|mapsplice]]|2.2.0|'' | ||
| |[[marginalign-software|marginalign]]|git-2369dafd|'' | |[[marginalign-software|marginalign]]|git-2369dafd|'' | ||
| Line 186: | Line 192: | ||
| |[[multiqc-software|multiqc]]|1.6|'' | |[[multiqc-software|multiqc]]|1.6|'' | ||
| |[[muscle-software|muscle]]|3.8.1551|'' | |[[muscle-software|muscle]]|3.8.1551|'' | ||
| - | |[[mummer-software|MUMmer]]|3.23|'' | + | |[[mummer-software|mummer]]|4.0.0rc1|'' |
| |[[nanopolish-software|nanopolish]]|0.10.2|'' | |[[nanopolish-software|nanopolish]]|0.10.2|'' | ||
| |[[netmhcpan-software|netmhcpan]]|2.8|'' | |[[netmhcpan-software|netmhcpan]]|2.8|'' | ||
| Line 237: | Line 243: | ||
| |[[quickmerge-software|quickmerge]]|0.3|'' | |[[quickmerge-software|quickmerge]]|0.3|'' | ||
| |[[quorum-software|Quorum]]|1.1.1|'' | |[[quorum-software|Quorum]]|1.1.1|'' | ||
| - | |[[r-software|R]]|3.6.1|'' | + | |[[r-software|R]]|4.0.3|'' |
| |[[racon-software|racon]]|1.3.1|'' | |[[racon-software|racon]]|1.3.1|'' | ||
| - | |[[rmblast-software|rmblast]]|2.2.28|'' | + | |[[rmblast-software|rmblast]]|2.10.0|'' |
| |[[rapsearch-software|rapsearch]]|2.22|'' | |[[rapsearch-software|rapsearch]]|2.22|'' | ||
| |[[ratt-software|RATT]]|r18|'' | |[[ratt-software|RATT]]|r18|'' | ||
| Line 245: | Line 251: | ||
| |[[ray-software|ray]]|2.3.1|'' | |[[ray-software|ray]]|2.3.1|'' | ||
| |[[rdp-classifier-software|RDP Classifier]]|2.11|'' | |[[rdp-classifier-software|RDP Classifier]]|2.11|'' | ||
| - | |repeatmasker|4.0.5|'' | + | |[[repeatmasker-software|repeatmasker]]|4.1.1|'' |
| |[[repseqio-software|repseqio]]|1.3.3|'' | |[[repseqio-software|repseqio]]|1.3.3|'' | ||
| |[[root-software|root]]|6.08.06|'' | |[[root-software|root]]|6.08.06|'' | ||
| Line 255: | Line 261: | ||
| |[[sailfish-software|sailfish]]|0.9.2|'' | |[[sailfish-software|sailfish]]|0.9.2|'' | ||
| |[[salmon-software|salmon]]|1.3.0|'' | |[[salmon-software|salmon]]|1.3.0|'' | ||
| + | |[[salsa-software|salsa]]|git-974589f3|'' | ||
| |[[scipio-software|scipio]]|1.4.1|'' | |[[scipio-software|scipio]]|1.4.1|'' | ||
| |[[scythe-software|scythe]]|0.994-beta|'' | |[[scythe-software|scythe]]|0.994-beta|'' | ||
| Line 307: | Line 314: | ||
| |[[transdecoder-software|TransDecoder]]|2.0.1|'' | |[[transdecoder-software|TransDecoder]]|2.0.1|'' | ||
| |[[transrate-software|Transrate]]|1.0.3|'' | |[[transrate-software|Transrate]]|1.0.3|'' | ||
| - | |[[trf-software|trf]]|4.0.4|'' | + | |[[trf-software|trf]]|4.0.9|'' |
| |[[trimmomatic-software|trimmomatic]]|0.38|'' | |[[trimmomatic-software|trimmomatic]]|0.38|'' | ||
| |[[trinity-software|trinity]]|v2.11.0|'' | |[[trinity-software|trinity]]|v2.11.0|'' | ||
list-of-software.txt · Last modified: 2024/06/19 11:50 by aorth