list-of-software
Differences
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| list-of-software [2020/10/10 10:14] – aorth | list-of-software [2020/11/11 08:44] – aorth | ||
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| |[[cnvnator-software|CNVnator]]|0.3.3|'' | |[[cnvnator-software|CNVnator]]|0.3.3|'' | ||
| |consed|20.0|'' | |consed|20.0|'' | ||
| + | |[[cooler-software|cooler]]|0.8.10|'' | ||
| |[[coperead-software|COPEread]]|1.1.2|'' | |[[coperead-software|COPEread]]|1.1.2|'' | ||
| |[[corset-software|corset]]|1.06|'' | |[[corset-software|corset]]|1.06|'' | ||
| Line 100: | Line 101: | ||
| |[[gapfiller-software|gapfiller]]|1.10|'' | |[[gapfiller-software|gapfiller]]|1.10|'' | ||
| |[[geneid-software|geneid]]|1.4.4|'' | |[[geneid-software|geneid]]|1.4.4|'' | ||
| + | |[[genometools-software|genometools]]|1.6.1|'' | ||
| |[[genscan-software|genscan]]|latest|'' | |[[genscan-software|genscan]]|latest|'' | ||
| |[[gffread-software|gffread]]|0.9.6|'' | |[[gffread-software|gffread]]|0.9.6|'' | ||
| Line 117: | Line 119: | ||
| |[[hmmer-software|hmmer]]|3.3|'' | |[[hmmer-software|hmmer]]|3.3|'' | ||
| |[[hpg-variant-software|hpg-variant]]|1.0|'' | |[[hpg-variant-software|hpg-variant]]|1.0|'' | ||
| + | |[[hic_qc-software|hic_qc]]|git-1e132fb2|'' | ||
| |[[hisat2-software|hisat2]]|2.1.0|'' | |[[hisat2-software|hisat2]]|2.1.0|'' | ||
| |[[htseq-software|htseq]]|0.9.1|'' | |[[htseq-software|htseq]]|0.9.1|'' | ||
| Line 131: | Line 134: | ||
| |[[interproscan-software|interproscan]]|5.13|'' | |[[interproscan-software|interproscan]]|5.13|'' | ||
| |i-tasser|latest|'' | |i-tasser|latest|'' | ||
| - | |[[jellyfish-software|jellyfish]]|2.2.9|'' | + | |[[jellyfish-software|jellyfish]]|2.3.0|'' |
| |jMHC|1.5.0929|'' | |jMHC|1.5.0929|'' | ||
| |julia|v0.1.2|'' | |julia|v0.1.2|'' | ||
| Line 151: | Line 154: | ||
| |lucy|1.19p|'' | |lucy|1.19p|'' | ||
| |[[mafft-software|mafft]]|7.313|'' | |[[mafft-software|mafft]]|7.313|'' | ||
| + | |[[maker-software|maker]]|3.01.03|'' | ||
| |[[mapsplice-software|mapsplice]]|2.2.0|'' | |[[mapsplice-software|mapsplice]]|2.2.0|'' | ||
| |[[marginalign-software|marginalign]]|git-2369dafd|'' | |[[marginalign-software|marginalign]]|git-2369dafd|'' | ||
| Line 239: | Line 243: | ||
| |[[r-software|R]]|3.6.1|'' | |[[r-software|R]]|3.6.1|'' | ||
| |[[racon-software|racon]]|1.3.1|'' | |[[racon-software|racon]]|1.3.1|'' | ||
| - | |[[rmblast-software|rmblast]]|2.2.28|'' | + | |[[rmblast-software|rmblast]]|2.10.0|'' |
| |[[rapsearch-software|rapsearch]]|2.22|'' | |[[rapsearch-software|rapsearch]]|2.22|'' | ||
| |[[ratt-software|RATT]]|r18|'' | |[[ratt-software|RATT]]|r18|'' | ||
| Line 245: | Line 249: | ||
| |[[ray-software|ray]]|2.3.1|'' | |[[ray-software|ray]]|2.3.1|'' | ||
| |[[rdp-classifier-software|RDP Classifier]]|2.11|'' | |[[rdp-classifier-software|RDP Classifier]]|2.11|'' | ||
| - | |repeatmasker|4.0.5|'' | + | |[[repeatmasker-software|repeatmasker]]|4.1.1|'' |
| |[[repseqio-software|repseqio]]|1.3.3|'' | |[[repseqio-software|repseqio]]|1.3.3|'' | ||
| |[[root-software|root]]|6.08.06|'' | |[[root-software|root]]|6.08.06|'' | ||
| Line 254: | Line 258: | ||
| |[[samtools-software|samtools]]|1.9|'' | |[[samtools-software|samtools]]|1.9|'' | ||
| |[[sailfish-software|sailfish]]|0.9.2|'' | |[[sailfish-software|sailfish]]|0.9.2|'' | ||
| - | |[[salmon-software|salmon]]|0.9.1|'' | + | |[[salmon-software|salmon]]|1.3.0|'' |
| |[[scipio-software|scipio]]|1.4.1|'' | |[[scipio-software|scipio]]|1.4.1|'' | ||
| |[[scythe-software|scythe]]|0.994-beta|'' | |[[scythe-software|scythe]]|0.994-beta|'' | ||
| Line 307: | Line 311: | ||
| |[[transdecoder-software|TransDecoder]]|2.0.1|'' | |[[transdecoder-software|TransDecoder]]|2.0.1|'' | ||
| |[[transrate-software|Transrate]]|1.0.3|'' | |[[transrate-software|Transrate]]|1.0.3|'' | ||
| - | |[[trf-software|trf]]|4.0.4|'' | + | |[[trf-software|trf]]|4.0.9|'' |
| |[[trimmomatic-software|trimmomatic]]|0.38|'' | |[[trimmomatic-software|trimmomatic]]|0.38|'' | ||
| - | |[[trinity-software|trinity]]|v2.6.6|'' | + | |[[trinity-software|trinity]]|v2.11.0|'' |
| |[[trinotate-software|trinotate]]|2.0.2|'' | |[[trinotate-software|trinotate]]|2.0.2|'' | ||
| |[[twinscan-software|twinscan]]|3.5|'' | |[[twinscan-software|twinscan]]|3.5|'' | ||
list-of-software.txt · Last modified: 2024/06/19 11:50 by aorth