list-of-software
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list-of-software [2020/08/22 14:19] – aorth | list-of-software [2020/11/01 15:00] – aorth | ||
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^Name | ^Name | ||
- | |[[abyss-software|abyss]]|2.1.4|'' | ||
|abacas|1.3.1|'' | |abacas|1.3.1|'' | ||
+ | |[[abricate-software|abricate]]|1.0.1|'' | ||
+ | |[[abyss-software|abyss]]|2.1.4|'' | ||
|[[ace-software|ace]]|1.01|'' | |[[ace-software|ace]]|1.01|'' | ||
|[[ACT-software|ACT]]|13.0.0|'' | |[[ACT-software|ACT]]|13.0.0|'' | ||
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|[[flexbar-software|flexbar]]|2.7.0|'' | |[[flexbar-software|flexbar]]|2.7.0|'' | ||
|[[flux-capacitor-software|flux-capacitor]]|1.6.1|'' | |[[flux-capacitor-software|flux-capacitor]]|1.6.1|'' | ||
- | |[[flye-software|flye]]|2.4.2|'' | + | |[[flye-software|flye]]|2.8.1|'' |
|frappe|1.1|'' | |frappe|1.1|'' | ||
|[[fraggenescan-software|FragGeneScan ]]|1.30|'' | |[[fraggenescan-software|FragGeneScan ]]|1.30|'' | ||
Line 124: | Line 125: | ||
|[[igrec-software|igrec]]|3.0.0|'' | |[[igrec-software|igrec]]|3.0.0|'' | ||
|[[igsimulator-software|igsimulator]]|git-c3778b74|'' | |[[igsimulator-software|igsimulator]]|git-c3778b74|'' | ||
- | |[[igtree-software|iqtree]]|1.6.12|'' | + | |[[iqtree-software|iqtree]]|1.6.12|'' |
|[[igv-software|igv]]|2.4.5|'' | |[[igv-software|igv]]|2.4.5|'' | ||
|[[igvtools-software|igvtools]]|2.3.98|'' | |[[igvtools-software|igvtools]]|2.3.98|'' | ||
Line 130: | Line 131: | ||
|[[interproscan-software|interproscan]]|5.13|'' | |[[interproscan-software|interproscan]]|5.13|'' | ||
|i-tasser|latest|'' | |i-tasser|latest|'' | ||
- | |[[jellyfish-software|jellyfish]]|2.2.9|'' | + | |[[jellyfish-software|jellyfish]]|2.3.0|'' |
|jMHC|1.5.0929|'' | |jMHC|1.5.0929|'' | ||
|julia|v0.1.2|'' | |julia|v0.1.2|'' | ||
Line 178: | Line 179: | ||
|mkatari-ilri|latest|'' | |mkatari-ilri|latest|'' | ||
|[[modeller-software|modeller]]|9.17|'' | |[[modeller-software|modeller]]|9.17|'' | ||
+ | |[[mosdepth-software|mosdepth]]|0.2.9|'' | ||
|[[mothur-software|mothur]]|1.44.1|'' | |[[mothur-software|mothur]]|1.44.1|'' | ||
|[[mothur-krona-software|mothur-krona]]|git-87499a0|'' | |[[mothur-krona-software|mothur-krona]]|git-87499a0|'' | ||
|mpiblast|1.6.0|'' | |mpiblast|1.6.0|'' | ||
|mrbayes|3.2.2|'' | |mrbayes|3.2.2|'' | ||
- | |[[multiqc-software|multiqc]]|1.4|'' | + | |[[multiqc-software|multiqc]]|1.6|'' |
|[[muscle-software|muscle]]|3.8.1551|'' | |[[muscle-software|muscle]]|3.8.1551|'' | ||
|[[mummer-software|MUMmer]]|3.23|'' | |[[mummer-software|MUMmer]]|3.23|'' | ||
Line 190: | Line 192: | ||
|[[nextflow-software|nextflow]]|20.04.1|'' | |[[nextflow-software|nextflow]]|20.04.1|'' | ||
|[[ntcard-software|ntCard]]|1.0.0|'' | |[[ntcard-software|ntCard]]|1.0.0|'' | ||
+ | |[[ngmlr-software|ngmlr]]|0.2.7|'' | ||
|[[ngsqctoolkit-software|ngsqctoolkit]]|2.3.3|'' | |[[ngsqctoolkit-software|ngsqctoolkit]]|2.3.3|'' | ||
|novacraft|3.02.07|'' | |novacraft|3.02.07|'' | ||
Line 214: | Line 217: | ||
|[[picrust-software# | |[[picrust-software# | ||
|[[pilon-software|pilon]]|1.23|'' | |[[pilon-software|pilon]]|1.23|'' | ||
+ | |[[plasmidid-software|plasmidid]]|1.6.3|'' | ||
|[[platanus-software|platanus]]|1.2.1|'' | |[[platanus-software|platanus]]|1.2.1|'' | ||
|[[plink-software|plink]]|2.00-alpha|'' | |[[plink-software|plink]]|2.00-alpha|'' | ||
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|qdd|3_beta|'' | |qdd|3_beta|'' | ||
|[[qiime-software|qiime]]|1.9.1|'' | |[[qiime-software|qiime]]|1.9.1|'' | ||
- | |[[qiime2-software|qiime2]]|2019.10|'' | + | |[[qiime2-software|qiime2]]|2020.8|'' |
|[[quast-software|quast]]|5.0.2|'' | |[[quast-software|quast]]|5.0.2|'' | ||
|[[quickmerge-software|quickmerge]]|0.3|'' | |[[quickmerge-software|quickmerge]]|0.3|'' | ||
Line 235: | Line 239: | ||
|[[r-software|R]]|3.6.1|'' | |[[r-software|R]]|3.6.1|'' | ||
|[[racon-software|racon]]|1.3.1|'' | |[[racon-software|racon]]|1.3.1|'' | ||
- | |[[rmblast-software|rmblast]]|2.2.28|'' | + | |[[rmblast-software|rmblast]]|2.10.0|'' |
|[[rapsearch-software|rapsearch]]|2.22|'' | |[[rapsearch-software|rapsearch]]|2.22|'' | ||
|[[ratt-software|RATT]]|r18|'' | |[[ratt-software|RATT]]|r18|'' | ||
Line 241: | Line 245: | ||
|[[ray-software|ray]]|2.3.1|'' | |[[ray-software|ray]]|2.3.1|'' | ||
|[[rdp-classifier-software|RDP Classifier]]|2.11|'' | |[[rdp-classifier-software|RDP Classifier]]|2.11|'' | ||
- | |repeatmasker|4.0.5|'' | + | |[[repeatmasker-software|repeatmasker]]|4.1.1|'' |
|[[repseqio-software|repseqio]]|1.3.3|'' | |[[repseqio-software|repseqio]]|1.3.3|'' | ||
|[[root-software|root]]|6.08.06|'' | |[[root-software|root]]|6.08.06|'' | ||
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|[[samtools-software|samtools]]|1.9|'' | |[[samtools-software|samtools]]|1.9|'' | ||
|[[sailfish-software|sailfish]]|0.9.2|'' | |[[sailfish-software|sailfish]]|0.9.2|'' | ||
- | |[[salmon-software|salmon]]|0.9.1|'' | + | |[[salmon-software|salmon]]|1.3.0|'' |
|[[scipio-software|scipio]]|1.4.1|'' | |[[scipio-software|scipio]]|1.4.1|'' | ||
|[[scythe-software|scythe]]|0.994-beta|'' | |[[scythe-software|scythe]]|0.994-beta|'' | ||
Line 259: | Line 263: | ||
|[[seqqs-software|seqqs]]|git-3d053750|'' | |[[seqqs-software|seqqs]]|git-3d053750|'' | ||
|[[seqtk-software|seqtk]]|1.3|'' | |[[seqtk-software|seqtk]]|1.3|'' | ||
+ | |[[seqwish-software|seqwish]]|0.6|'' | ||
|[[shannon-software|shannon]]|0.0.2|'' | |[[shannon-software|shannon]]|0.0.2|'' | ||
|[[shasta-software|shasta]]|0.4.0|'' | |[[shasta-software|shasta]]|0.4.0|'' | ||
Line 302: | Line 307: | ||
|[[transdecoder-software|TransDecoder]]|2.0.1|'' | |[[transdecoder-software|TransDecoder]]|2.0.1|'' | ||
|[[transrate-software|Transrate]]|1.0.3|'' | |[[transrate-software|Transrate]]|1.0.3|'' | ||
- | |[[trf-software|trf]]|4.0.4|'' | + | |[[trf-software|trf]]|4.0.9|'' |
|[[trimmomatic-software|trimmomatic]]|0.38|'' | |[[trimmomatic-software|trimmomatic]]|0.38|'' | ||
- | |[[trinity-software|trinity]]|v2.6.6|'' | + | |[[trinity-software|trinity]]|v2.11.0|'' |
|[[trinotate-software|trinotate]]|2.0.2|'' | |[[trinotate-software|trinotate]]|2.0.2|'' | ||
|[[twinscan-software|twinscan]]|3.5|'' | |[[twinscan-software|twinscan]]|3.5|'' | ||
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|[[velvet-software|velvet]]|1.2.10-kmer111|'' | |[[velvet-software|velvet]]|1.2.10-kmer111|'' | ||
|[[vep-software|vep]]|92.1|'' | |[[vep-software|vep]]|92.1|'' | ||
+ | |[[vg-software|vg]]|1.27.0|'' | ||
|[[viennarna-software|viennarna]]|2.4.14|'' | |[[viennarna-software|viennarna]]|2.4.14|'' | ||
|[[virusdetect-software|virusdetect]]|1.7|'' | |[[virusdetect-software|virusdetect]]|1.7|'' |
list-of-software.txt · Last modified: 2024/06/19 11:50 by aorth