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list-of-software

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list-of-software [2020/08/22 14:19] – aorthlist-of-software [2020/09/15 19:04] – aorth
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 ^Name           ^Latest version                ^How to load                 ^Contact   ^ ^Name           ^Latest version                ^How to load                 ^Contact   ^
-|[[abyss-software|abyss]]|2.1.4|''module load abyss/2.1.4''| | 
 |abacas|1.3.1|''module load abacas/1.3.1''| | |abacas|1.3.1|''module load abacas/1.3.1''| |
 +|[[abricate-software|abricate]]|1.0.1|''module load abricate/1.0.1''| |
 +|[[abyss-software|abyss]]|2.1.4|''module load abyss/2.1.4''| |
 |[[ace-software|ace]]|1.01|''module load ace/1.01''| | |[[ace-software|ace]]|1.01|''module load ace/1.01''| |
 |[[ACT-software|ACT]]|13.0.0|''module load act/13.0.0''| | |[[ACT-software|ACT]]|13.0.0|''module load act/13.0.0''| |
Line 124: Line 125:
 |[[igrec-software|igrec]]|3.0.0|''module load igrec/3.0.0''| | |[[igrec-software|igrec]]|3.0.0|''module load igrec/3.0.0''| |
 |[[igsimulator-software|igsimulator]]|git-c3778b74|''module load igsimulator/git-c3778b74''| | |[[igsimulator-software|igsimulator]]|git-c3778b74|''module load igsimulator/git-c3778b74''| |
-|[[igtree-software|iqtree]]|1.6.12|''module load iqtree/1.6.12''| |+|[[iqtree-software|iqtree]]|1.6.12|''module load iqtree/1.6.12''| |
 |[[igv-software|igv]]|2.4.5|''module load igv/2.4.5''| | |[[igv-software|igv]]|2.4.5|''module load igv/2.4.5''| |
 |[[igvtools-software|igvtools]]|2.3.98|''module load igvtools/2.3.98''| | |[[igvtools-software|igvtools]]|2.3.98|''module load igvtools/2.3.98''| |
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 |mkatari-ilri|latest|''module load mkatari-ilri/latest''| | |mkatari-ilri|latest|''module load mkatari-ilri/latest''| |
 |[[modeller-software|modeller]]|9.17|''module load modeller/9.17''| | |[[modeller-software|modeller]]|9.17|''module load modeller/9.17''| |
 +|[[mosdepth-software|mosdepth]]|0.2.9|''module load mosdepth/0.2.9''| |
 |[[mothur-software|mothur]]|1.44.1|''module load mothur/1.44.1''| | |[[mothur-software|mothur]]|1.44.1|''module load mothur/1.44.1''| |
 |[[mothur-krona-software|mothur-krona]]|git-87499a0|''module load mothur-krona/git-87499a0''| | |[[mothur-krona-software|mothur-krona]]|git-87499a0|''module load mothur-krona/git-87499a0''| |
 |mpiblast|1.6.0|''module load mpiblast/1.6.0''| | |mpiblast|1.6.0|''module load mpiblast/1.6.0''| |
 |mrbayes|3.2.2|''module load mrbayes/3.2.2''| | |mrbayes|3.2.2|''module load mrbayes/3.2.2''| |
-|[[multiqc-software|multiqc]]|1.4|''module load multiqc/1.4''| |+|[[multiqc-software|multiqc]]|1.6|''module load multiqc/1.6''| |
 |[[muscle-software|muscle]]|3.8.1551|''module load muscle/3.8.1551''|  | |[[muscle-software|muscle]]|3.8.1551|''module load muscle/3.8.1551''|  |
 |[[mummer-software|MUMmer]]|3.23|''module load MUMmer/3.23''| | |[[mummer-software|MUMmer]]|3.23|''module load MUMmer/3.23''| |
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 |[[nextflow-software|nextflow]]|20.04.1|''module load nextflow/20.04.1''| | |[[nextflow-software|nextflow]]|20.04.1|''module load nextflow/20.04.1''| |
 |[[ntcard-software|ntCard]]|1.0.0|''module load ntCard/1.0.0''| | |[[ntcard-software|ntCard]]|1.0.0|''module load ntCard/1.0.0''| |
 +|[[ngmlr-software|ngmlr]]|0.2.7|''module load ngmlr/0.2.7''| |
 |[[ngsqctoolkit-software|ngsqctoolkit]]|2.3.3|''module load ngsqctoolkit/2.3.3''| | |[[ngsqctoolkit-software|ngsqctoolkit]]|2.3.3|''module load ngsqctoolkit/2.3.3''| |
 |novacraft|3.02.07|''module load novacraft/3.02.07''| | |novacraft|3.02.07|''module load novacraft/3.02.07''| |
Line 259: Line 262:
 |[[seqqs-software|seqqs]]|git-3d053750|''module load seqqs/git-3d053750''| | |[[seqqs-software|seqqs]]|git-3d053750|''module load seqqs/git-3d053750''| |
 |[[seqtk-software|seqtk]]|1.3|''module load seqtk/1.3''| | |[[seqtk-software|seqtk]]|1.3|''module load seqtk/1.3''| |
 +|[[seqwish-software|seqwish]]|0.6|''module load seqwish/0.6''| |
 |[[shannon-software|shannon]]|0.0.2|''module load shannon/0.0.2''| | |[[shannon-software|shannon]]|0.0.2|''module load shannon/0.0.2''| |
 |[[shasta-software|shasta]]|0.4.0|''module load shasta/0.4.0''| | |[[shasta-software|shasta]]|0.4.0|''module load shasta/0.4.0''| |
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 |[[velvet-software|velvet]]|1.2.10-kmer111|''module load velvet/1.2.10-kmer111''| | |[[velvet-software|velvet]]|1.2.10-kmer111|''module load velvet/1.2.10-kmer111''| |
 |[[vep-software|vep]]|92.1|''module load vep/92.1''| | |[[vep-software|vep]]|92.1|''module load vep/92.1''| |
 +|[[vg-software|vg]]|1.27.0|''module load vg/1.27.0''| |
 |[[viennarna-software|viennarna]]|2.4.14|''module load viennarna/2.4.14''| | |[[viennarna-software|viennarna]]|2.4.14|''module load viennarna/2.4.14''| |
 |[[virusdetect-software|virusdetect]]|1.7|''module load virusdetect/1.7''| | |[[virusdetect-software|virusdetect]]|1.7|''module load virusdetect/1.7''| |
list-of-software.txt · Last modified: 2024/06/19 11:50 by aorth