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list-of-software

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list-of-software [2020/07/27 10:56] – aorthlist-of-software [2020/09/15 12:56] – aorth
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 ^Name           ^Latest version                ^How to load                 ^Contact   ^ ^Name           ^Latest version                ^How to load                 ^Contact   ^
-|[[abyss-software|abyss]]|2.1.4|''module load abyss/2.1.4''| | 
 |abacas|1.3.1|''module load abacas/1.3.1''| | |abacas|1.3.1|''module load abacas/1.3.1''| |
 +|[[abricate-software|abricate]]|1.0.1|''module load abricate/1.0.1''| |
 +|[[abyss-software|abyss]]|2.1.4|''module load abyss/2.1.4''| |
 |[[ace-software|ace]]|1.01|''module load ace/1.01''| | |[[ace-software|ace]]|1.01|''module load ace/1.01''| |
 |[[ACT-software|ACT]]|13.0.0|''module load act/13.0.0''| | |[[ACT-software|ACT]]|13.0.0|''module load act/13.0.0''| |
Line 18: Line 19:
 |[[angsd-software|angsd]]|0.910|''module load angsd/0.910''| | |[[angsd-software|angsd]]|0.910|''module load angsd/0.910''| |
 |[[annovar-software|annovar]]|2016-02-01|''module load annovar/2016-02-01''| | |[[annovar-software|annovar]]|2016-02-01|''module load annovar/2016-02-01''| |
 +|[[any2fasta-software|any2fasta]]|0.4.2|''module load any2fasta/0.4.2''| |
 |apt|1.14.3|''module load apt/1.14.3''| | |apt|1.14.3|''module load apt/1.14.3''| |
 |[[arb-software|arb]]|6.0.3|''module load arb/6.0.3''| | |[[arb-software|arb]]|6.0.3|''module load arb/6.0.3''| |
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 |[[igrec-software|igrec]]|3.0.0|''module load igrec/3.0.0''| | |[[igrec-software|igrec]]|3.0.0|''module load igrec/3.0.0''| |
 |[[igsimulator-software|igsimulator]]|git-c3778b74|''module load igsimulator/git-c3778b74''| | |[[igsimulator-software|igsimulator]]|git-c3778b74|''module load igsimulator/git-c3778b74''| |
 +|[[iqtree-software|iqtree]]|1.6.12|''module load iqtree/1.6.12''| |
 |[[igv-software|igv]]|2.4.5|''module load igv/2.4.5''| | |[[igv-software|igv]]|2.4.5|''module load igv/2.4.5''| |
 |[[igvtools-software|igvtools]]|2.3.98|''module load igvtools/2.3.98''| | |[[igvtools-software|igvtools]]|2.3.98|''module load igvtools/2.3.98''| |
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 |mkatari-ilri|latest|''module load mkatari-ilri/latest''| | |mkatari-ilri|latest|''module load mkatari-ilri/latest''| |
 |[[modeller-software|modeller]]|9.17|''module load modeller/9.17''| | |[[modeller-software|modeller]]|9.17|''module load modeller/9.17''| |
 +|[[mosdepth-software|mosdepth]]|0.2.9|''module load mosdepth/0.2.9''| |
 |[[mothur-software|mothur]]|1.44.1|''module load mothur/1.44.1''| | |[[mothur-software|mothur]]|1.44.1|''module load mothur/1.44.1''| |
 |[[mothur-krona-software|mothur-krona]]|git-87499a0|''module load mothur-krona/git-87499a0''| | |[[mothur-krona-software|mothur-krona]]|git-87499a0|''module load mothur-krona/git-87499a0''| |
 |mpiblast|1.6.0|''module load mpiblast/1.6.0''| | |mpiblast|1.6.0|''module load mpiblast/1.6.0''| |
 |mrbayes|3.2.2|''module load mrbayes/3.2.2''| | |mrbayes|3.2.2|''module load mrbayes/3.2.2''| |
-|[[multiqc-software|multiqc]]|1.4|''module load multiqc/1.4''| |+|[[multiqc-software|multiqc]]|1.6|''module load multiqc/1.6''| |
 |[[muscle-software|muscle]]|3.8.1551|''module load muscle/3.8.1551''|  | |[[muscle-software|muscle]]|3.8.1551|''module load muscle/3.8.1551''|  |
 |[[mummer-software|MUMmer]]|3.23|''module load MUMmer/3.23''| | |[[mummer-software|MUMmer]]|3.23|''module load MUMmer/3.23''| |
Line 188: Line 192:
 |[[nextflow-software|nextflow]]|20.04.1|''module load nextflow/20.04.1''| | |[[nextflow-software|nextflow]]|20.04.1|''module load nextflow/20.04.1''| |
 |[[ntcard-software|ntCard]]|1.0.0|''module load ntCard/1.0.0''| | |[[ntcard-software|ntCard]]|1.0.0|''module load ntCard/1.0.0''| |
 +|[[ngmlr-software|ngmlr]]|0.2.7|''module load ngmlr/0.2.7''| |
 |[[ngsqctoolkit-software|ngsqctoolkit]]|2.3.3|''module load ngsqctoolkit/2.3.3''| | |[[ngsqctoolkit-software|ngsqctoolkit]]|2.3.3|''module load ngsqctoolkit/2.3.3''| |
 |novacraft|3.02.07|''module load novacraft/3.02.07''| | |novacraft|3.02.07|''module load novacraft/3.02.07''| |
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 |[[smartdenovo-software|smartdenovo]]|git-5cc1356b|''module load smartdenovo/git-5cc1356b''| | |[[smartdenovo-software|smartdenovo]]|git-5cc1356b|''module load smartdenovo/git-5cc1356b''| |
 |[[snakemake-software|snakemake]]|5.7.0|''module load snakemake/5.7.0''| | |[[snakemake-software|snakemake]]|5.7.0|''module load snakemake/5.7.0''| |
 +|[[sniffles-software|sniffles]]|1.0.12b|''module load sniffles/1.0.12b''| |
 |snowhite|1.1.4|''module load snowhite/1.1.4''| | |snowhite|1.1.4|''module load snowhite/1.1.4''| |
 |[[snpeff-software|SnpEff & SnpSift]]|4.1g|''module load snpeff/4.1g''| | |[[snpeff-software|SnpEff & SnpSift]]|4.1g|''module load snpeff/4.1g''| |
list-of-software.txt · Last modified: 2024/06/19 11:50 by aorth