list-of-software
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list-of-software [2020/06/10 18:11] – aorth | list-of-software [2020/10/10 10:14] – aorth | ||
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^Name | ^Name | ||
- | |[[abyss-software|abyss]]|2.1.4|'' | ||
|abacas|1.3.1|'' | |abacas|1.3.1|'' | ||
+ | |[[abricate-software|abricate]]|1.0.1|'' | ||
+ | |[[abyss-software|abyss]]|2.1.4|'' | ||
|[[ace-software|ace]]|1.01|'' | |[[ace-software|ace]]|1.01|'' | ||
|[[ACT-software|ACT]]|13.0.0|'' | |[[ACT-software|ACT]]|13.0.0|'' | ||
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|[[angsd-software|angsd]]|0.910|'' | |[[angsd-software|angsd]]|0.910|'' | ||
|[[annovar-software|annovar]]|2016-02-01|'' | |[[annovar-software|annovar]]|2016-02-01|'' | ||
+ | |[[any2fasta-software|any2fasta]]|0.4.2|'' | ||
|apt|1.14.3|'' | |apt|1.14.3|'' | ||
|[[arb-software|arb]]|6.0.3|'' | |[[arb-software|arb]]|6.0.3|'' | ||
Line 44: | Line 46: | ||
|[[brig-software|brig]]|0.95|'' | |[[brig-software|brig]]|0.95|'' | ||
|[[busco-software|BUSCO ]]|4.0.6|'' | |[[busco-software|BUSCO ]]|4.0.6|'' | ||
- | |[[bwa-software|bwa]]|0.7.15|'' | + | |[[bwa-software|bwa]]|0.7.17|'' |
|[[cafe-software|cafe]]|4.1|'' | |[[cafe-software|cafe]]|4.1|'' | ||
|cangs|1.1|'' | |cangs|1.1|'' | ||
Line 90: | Line 92: | ||
|[[flexbar-software|flexbar]]|2.7.0|'' | |[[flexbar-software|flexbar]]|2.7.0|'' | ||
|[[flux-capacitor-software|flux-capacitor]]|1.6.1|'' | |[[flux-capacitor-software|flux-capacitor]]|1.6.1|'' | ||
- | |[[flye-software|flye]]|2.4.2|'' | + | |[[flye-software|flye]]|2.8.1|'' |
|frappe|1.1|'' | |frappe|1.1|'' | ||
|[[fraggenescan-software|FragGeneScan ]]|1.30|'' | |[[fraggenescan-software|FragGeneScan ]]|1.30|'' | ||
Line 123: | Line 125: | ||
|[[igrec-software|igrec]]|3.0.0|'' | |[[igrec-software|igrec]]|3.0.0|'' | ||
|[[igsimulator-software|igsimulator]]|git-c3778b74|'' | |[[igsimulator-software|igsimulator]]|git-c3778b74|'' | ||
+ | |[[iqtree-software|iqtree]]|1.6.12|'' | ||
|[[igv-software|igv]]|2.4.5|'' | |[[igv-software|igv]]|2.4.5|'' | ||
|[[igvtools-software|igvtools]]|2.3.98|'' | |[[igvtools-software|igvtools]]|2.3.98|'' | ||
Line 176: | Line 179: | ||
|mkatari-ilri|latest|'' | |mkatari-ilri|latest|'' | ||
|[[modeller-software|modeller]]|9.17|'' | |[[modeller-software|modeller]]|9.17|'' | ||
- | |[[mothur-software|mothur]]|1.39.5|'' | + | |[[mosdepth-software|mosdepth]]|0.2.9|'' |
+ | |[[mothur-software|mothur]]|1.44.1|'' | ||
|[[mothur-krona-software|mothur-krona]]|git-87499a0|'' | |[[mothur-krona-software|mothur-krona]]|git-87499a0|'' | ||
|mpiblast|1.6.0|'' | |mpiblast|1.6.0|'' | ||
|mrbayes|3.2.2|'' | |mrbayes|3.2.2|'' | ||
- | |[[multiqc-software|multiqc]]|1.4|'' | + | |[[multiqc-software|multiqc]]|1.6|'' |
|[[muscle-software|muscle]]|3.8.1551|'' | |[[muscle-software|muscle]]|3.8.1551|'' | ||
|[[mummer-software|MUMmer]]|3.23|'' | |[[mummer-software|MUMmer]]|3.23|'' | ||
Line 186: | Line 190: | ||
|[[netmhcpan-software|netmhcpan]]|2.8|'' | |[[netmhcpan-software|netmhcpan]]|2.8|'' | ||
|[[nextclip-software|nextclip]]|1.3.1|'' | |[[nextclip-software|nextclip]]|1.3.1|'' | ||
- | |[[nextflow-software|nextflow]]|19.10.0|'' | + | |[[nextflow-software|nextflow]]|20.04.1|'' |
|[[ntcard-software|ntCard]]|1.0.0|'' | |[[ntcard-software|ntCard]]|1.0.0|'' | ||
+ | |[[ngmlr-software|ngmlr]]|0.2.7|'' | ||
|[[ngsqctoolkit-software|ngsqctoolkit]]|2.3.3|'' | |[[ngsqctoolkit-software|ngsqctoolkit]]|2.3.3|'' | ||
|novacraft|3.02.07|'' | |novacraft|3.02.07|'' | ||
Line 212: | Line 217: | ||
|[[picrust-software# | |[[picrust-software# | ||
|[[pilon-software|pilon]]|1.23|'' | |[[pilon-software|pilon]]|1.23|'' | ||
+ | |[[plasmidid-software|plasmidid]]|1.6.3|'' | ||
|[[platanus-software|platanus]]|1.2.1|'' | |[[platanus-software|platanus]]|1.2.1|'' | ||
|[[plink-software|plink]]|2.00-alpha|'' | |[[plink-software|plink]]|2.00-alpha|'' | ||
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|qdd|3_beta|'' | |qdd|3_beta|'' | ||
|[[qiime-software|qiime]]|1.9.1|'' | |[[qiime-software|qiime]]|1.9.1|'' | ||
- | |[[qiime2-software|qiime2]]|2019.10|'' | + | |[[qiime2-software|qiime2]]|2020.8|'' |
|[[quast-software|quast]]|5.0.2|'' | |[[quast-software|quast]]|5.0.2|'' | ||
|[[quickmerge-software|quickmerge]]|0.3|'' | |[[quickmerge-software|quickmerge]]|0.3|'' | ||
Line 257: | Line 263: | ||
|[[seqqs-software|seqqs]]|git-3d053750|'' | |[[seqqs-software|seqqs]]|git-3d053750|'' | ||
|[[seqtk-software|seqtk]]|1.3|'' | |[[seqtk-software|seqtk]]|1.3|'' | ||
+ | |[[seqwish-software|seqwish]]|0.6|'' | ||
|[[shannon-software|shannon]]|0.0.2|'' | |[[shannon-software|shannon]]|0.0.2|'' | ||
|[[shasta-software|shasta]]|0.4.0|'' | |[[shasta-software|shasta]]|0.4.0|'' | ||
Line 265: | Line 272: | ||
|[[smartdenovo-software|smartdenovo]]|git-5cc1356b|'' | |[[smartdenovo-software|smartdenovo]]|git-5cc1356b|'' | ||
|[[snakemake-software|snakemake]]|5.7.0|'' | |[[snakemake-software|snakemake]]|5.7.0|'' | ||
+ | |[[sniffles-software|sniffles]]|1.0.12b|'' | ||
|snowhite|1.1.4|'' | |snowhite|1.1.4|'' | ||
|[[snpeff-software|SnpEff & SnpSift]]|4.1g|'' | |[[snpeff-software|SnpEff & SnpSift]]|4.1g|'' | ||
Line 312: | Line 320: | ||
|[[velvet-software|velvet]]|1.2.10-kmer111|'' | |[[velvet-software|velvet]]|1.2.10-kmer111|'' | ||
|[[vep-software|vep]]|92.1|'' | |[[vep-software|vep]]|92.1|'' | ||
+ | |[[vg-software|vg]]|1.27.0|'' | ||
|[[viennarna-software|viennarna]]|2.4.14|'' | |[[viennarna-software|viennarna]]|2.4.14|'' | ||
|[[virusdetect-software|virusdetect]]|1.7|'' | |[[virusdetect-software|virusdetect]]|1.7|'' |
list-of-software.txt · Last modified: 2024/06/19 11:50 by aorth