list-of-software
Differences
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| list-of-software [2020/05/03 14:34] – aorth | list-of-software [2020/08/22 14:19] – aorth | ||
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| |[[angsd-software|angsd]]|0.910|'' | |[[angsd-software|angsd]]|0.910|'' | ||
| |[[annovar-software|annovar]]|2016-02-01|'' | |[[annovar-software|annovar]]|2016-02-01|'' | ||
| + | |[[any2fasta-software|any2fasta]]|0.4.2|'' | ||
| |apt|1.14.3|'' | |apt|1.14.3|'' | ||
| |[[arb-software|arb]]|6.0.3|'' | |[[arb-software|arb]]|6.0.3|'' | ||
| Line 43: | Line 44: | ||
| |[[bowtie2-software|bowtie2 ]]|2.3.4.1|'' | |[[bowtie2-software|bowtie2 ]]|2.3.4.1|'' | ||
| |[[brig-software|brig]]|0.95|'' | |[[brig-software|brig]]|0.95|'' | ||
| - | |[[busco-software|BUSCO ]]|3.0.2|'' | + | |[[busco-software|BUSCO ]]|4.0.6|'' |
| - | |[[bwa-software|bwa]]|0.7.15|'' | + | |[[bwa-software|bwa]]|0.7.17|'' |
| |[[cafe-software|cafe]]|4.1|'' | |[[cafe-software|cafe]]|4.1|'' | ||
| |cangs|1.1|'' | |cangs|1.1|'' | ||
| Line 53: | Line 54: | ||
| |celera-wgs|6.1|'' | |celera-wgs|6.1|'' | ||
| |censor|4.2.28|'' | |censor|4.2.28|'' | ||
| - | |[[changeo-software|changeo]]|0.3.9|'' | + | |[[changeo-software|changeo]]|1.0.0|'' |
| |[[checkm-software|checkm]]|1.1.2|'' | |[[checkm-software|checkm]]|1.1.2|'' | ||
| |[[circos-software|circos]]|0.69-9|'' | |[[circos-software|circos]]|0.69-9|'' | ||
| Line 82: | Line 83: | ||
| |[[fastqc-software|fastqc]]|0.11.7|'' | |[[fastqc-software|fastqc]]|0.11.7|'' | ||
| |[[faststructure-software|fastSTRUCTURE]]|1.0|'' | |[[faststructure-software|fastSTRUCTURE]]|1.0|'' | ||
| + | |[[fasttree-software|fasttree]]|2.1.11|'' | ||
| |[[fastx-toolkit-software|fastx_toolkit]]|0.0.13|'' | |[[fastx-toolkit-software|fastx_toolkit]]|0.0.13|'' | ||
| |figtree|1.4.0|'' | |figtree|1.4.0|'' | ||
| Line 107: | Line 109: | ||
| |[[groovy-software|groovy]]|2.4.9|'' | |[[groovy-software|groovy]]|2.4.9|'' | ||
| |[[gsea-software|GSEA]]|2.2.3|'' | |[[gsea-software|GSEA]]|2.2.3|'' | ||
| + | |[[gtdbtk-software|gtdbtk]]|1.1.1|'' | ||
| |[[guidance-software|guidance]]|2.02|'' | |[[guidance-software|guidance]]|2.02|'' | ||
| |[[hapflk-software|hapflk]]|1.4|'' | |[[hapflk-software|hapflk]]|1.4|'' | ||
| Line 121: | Line 124: | ||
| |[[igrec-software|igrec]]|3.0.0|'' | |[[igrec-software|igrec]]|3.0.0|'' | ||
| |[[igsimulator-software|igsimulator]]|git-c3778b74|'' | |[[igsimulator-software|igsimulator]]|git-c3778b74|'' | ||
| + | |[[igtree-software|iqtree]]|1.6.12|'' | ||
| |[[igv-software|igv]]|2.4.5|'' | |[[igv-software|igv]]|2.4.5|'' | ||
| |[[igvtools-software|igvtools]]|2.3.98|'' | |[[igvtools-software|igvtools]]|2.3.98|'' | ||
| Line 149: | Line 153: | ||
| |[[marginalign-software|marginalign]]|git-2369dafd|'' | |[[marginalign-software|marginalign]]|git-2369dafd|'' | ||
| |[[marginpolish-software|marginpolish]]|1.0.0|'' | |[[marginpolish-software|marginpolish]]|1.0.0|'' | ||
| - | |[[mash-software|mash]]|2.0|'' | + | |[[mash-software|mash]]|2.2|'' |
| |[[masurca-software|masurca]]|3.3.1|'' | |[[masurca-software|masurca]]|3.3.1|'' | ||
| |mauve|2.3.1|'' | |mauve|2.3.1|'' | ||
| Line 174: | Line 178: | ||
| |mkatari-ilri|latest|'' | |mkatari-ilri|latest|'' | ||
| |[[modeller-software|modeller]]|9.17|'' | |[[modeller-software|modeller]]|9.17|'' | ||
| - | |[[mothur-software|mothur]]|1.39.5|'' | + | |[[mothur-software|mothur]]|1.44.1|'' |
| |[[mothur-krona-software|mothur-krona]]|git-87499a0|'' | |[[mothur-krona-software|mothur-krona]]|git-87499a0|'' | ||
| |mpiblast|1.6.0|'' | |mpiblast|1.6.0|'' | ||
| Line 184: | Line 188: | ||
| |[[netmhcpan-software|netmhcpan]]|2.8|'' | |[[netmhcpan-software|netmhcpan]]|2.8|'' | ||
| |[[nextclip-software|nextclip]]|1.3.1|'' | |[[nextclip-software|nextclip]]|1.3.1|'' | ||
| - | |[[nextflow-software|nextflow]]|19.10.0|'' | + | |[[nextflow-software|nextflow]]|20.04.1|'' |
| |[[ntcard-software|ntCard]]|1.0.0|'' | |[[ntcard-software|ntCard]]|1.0.0|'' | ||
| |[[ngsqctoolkit-software|ngsqctoolkit]]|2.3.3|'' | |[[ngsqctoolkit-software|ngsqctoolkit]]|2.3.3|'' | ||
| Line 201: | Line 205: | ||
| |[[pblat-software|pblat]]|2.1|'' | |[[pblat-software|pblat]]|2.1|'' | ||
| |[[pbsuite-software|pbsuite]]|15.8.24|'' | |[[pbsuite-software|pbsuite]]|15.8.24|'' | ||
| - | |[[perl-software|perl]]|5.22.3|'' | + | |[[perl-software|perl]]|5.28.2|'' |
| |[[pgdspider-software|PGDSpider]]|2.1.1.0|'' | |[[pgdspider-software|PGDSpider]]|2.1.1.0|'' | ||
| |phrap|1.080812|'' | |phrap|1.080812|'' | ||
| Line 220: | Line 224: | ||
| |[[prinseq-software|prinseq]]|0.20.4|'' | |[[prinseq-software|prinseq]]|0.20.4|'' | ||
| |[[prodigal-software|prodigal]]|2.6.3|'' | |[[prodigal-software|prodigal]]|2.6.3|'' | ||
| - | |[[prokka-software|prokka]]|1.11|'' | + | |[[prokka-software|prokka]]|1.14.6|'' |
| |[[provean-software|provean]]|1.1.5|'' | |[[provean-software|provean]]|1.1.5|'' | ||
| |[[python-software|python]]|3.7.7|'' | |[[python-software|python]]|3.7.7|'' | ||
| Line 249: | Line 253: | ||
| |[[scipio-software|scipio]]|1.4.1|'' | |[[scipio-software|scipio]]|1.4.1|'' | ||
| |[[scythe-software|scythe]]|0.994-beta|'' | |[[scythe-software|scythe]]|0.994-beta|'' | ||
| + | |[[sepp-software|sepp]]|4.3.8|'' | ||
| |[[seroba-software|seroba]]|1.0.0|'' | |[[seroba-software|seroba]]|1.0.0|'' | ||
| |seq_crumbs|0.1.8|'' | |seq_crumbs|0.1.8|'' | ||
| Line 262: | Line 267: | ||
| |[[smartdenovo-software|smartdenovo]]|git-5cc1356b|'' | |[[smartdenovo-software|smartdenovo]]|git-5cc1356b|'' | ||
| |[[snakemake-software|snakemake]]|5.7.0|'' | |[[snakemake-software|snakemake]]|5.7.0|'' | ||
| + | |[[sniffles-software|sniffles]]|1.0.12b|'' | ||
| |snowhite|1.1.4|'' | |snowhite|1.1.4|'' | ||
| |[[snpeff-software|SnpEff & SnpSift]]|4.1g|'' | |[[snpeff-software|SnpEff & SnpSift]]|4.1g|'' | ||
list-of-software.txt · Last modified: 2024/06/19 11:50 by aorth