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list-of-software [2020/04/27 14:26] – aorthlist-of-software [2020/06/10 18:11] – aorth
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 |[[bowtie2-software|bowtie2 ]]|2.3.4.1|''module load bowtie2/2.3.4.1''| | |[[bowtie2-software|bowtie2 ]]|2.3.4.1|''module load bowtie2/2.3.4.1''| |
 |[[brig-software|brig]]|0.95|''module load brig/0.95''| | |[[brig-software|brig]]|0.95|''module load brig/0.95''| |
-|[[busco-software|BUSCO ]]|3.0.2|''module load BUSCO/3.0.2''| |+|[[busco-software|BUSCO ]]|4.0.6|''module load BUSCO/4.0.6''| |
 |[[bwa-software|bwa]]|0.7.15|''module load bwa/0.7.15''| | |[[bwa-software|bwa]]|0.7.15|''module load bwa/0.7.15''| |
 |[[cafe-software|cafe]]|4.1|''module load cafe/4.1''| | |[[cafe-software|cafe]]|4.1|''module load cafe/4.1''| |
Line 53: Line 53:
 |celera-wgs|6.1|''module load celera-wgs/6.1''| | |celera-wgs|6.1|''module load celera-wgs/6.1''| |
 |censor|4.2.28|''module load censor/4.2.28''| | |censor|4.2.28|''module load censor/4.2.28''| |
-|[[changeo-software|changeo]]|0.3.9|''module load changeo/0.3.9''| |+|[[changeo-software|changeo]]|1.0.0|''module load changeo/1.0.0''| |
 |[[checkm-software|checkm]]|1.1.2|''module load checkm/1.1.2''| | |[[checkm-software|checkm]]|1.1.2|''module load checkm/1.1.2''| |
 |[[circos-software|circos]]|0.69-9|''module load circos/0.69-9''| | |[[circos-software|circos]]|0.69-9|''module load circos/0.69-9''| |
Line 78: Line 78:
 |[[exabayes-software|exabayes]]|1.4.1|''module load exabayes/1.4.1''| | |[[exabayes-software|exabayes]]|1.4.1|''module load exabayes/1.4.1''| |
 |[[express-software|express]]|1.5.1|''module load express/1.5.1''| | |[[express-software|express]]|1.5.1|''module load express/1.5.1''| |
 +|[[fastANI-software|fastANI]]|1.3|''module load fastANI/1.3''| |
 |[[fastPHASE-software|fastPHASE]]|1.4.8|''module load fastPHASE/1.4.8''| | |[[fastPHASE-software|fastPHASE]]|1.4.8|''module load fastPHASE/1.4.8''| |
 |[[fastqc-software|fastqc]]|0.11.7|''module load fastqc/0.11.7''| | |[[fastqc-software|fastqc]]|0.11.7|''module load fastqc/0.11.7''| |
 |[[faststructure-software|fastSTRUCTURE]]|1.0|''module load fastSTRUCTURE/1.0''| | |[[faststructure-software|fastSTRUCTURE]]|1.0|''module load fastSTRUCTURE/1.0''| |
 +|[[fasttree-software|fasttree]]|2.1.11|''module load fasttree/2.1.11''| |
 |[[fastx-toolkit-software|fastx_toolkit]]|0.0.13|''module load fastx_toolkit/0.0.13''| | |[[fastx-toolkit-software|fastx_toolkit]]|0.0.13|''module load fastx_toolkit/0.0.13''| |
 |figtree|1.4.0|''module load figtree/1.4.0''| | |figtree|1.4.0|''module load figtree/1.4.0''| |
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 |[[groovy-software|groovy]]|2.4.9|''module load groovy/2.4.9''| | |[[groovy-software|groovy]]|2.4.9|''module load groovy/2.4.9''| |
 |[[gsea-software|GSEA]]|2.2.3|''module load gsea/2.2.3''| | |[[gsea-software|GSEA]]|2.2.3|''module load gsea/2.2.3''| |
 +|[[gtdbtk-software|gtdbtk]]|1.1.1|''module load gtdbtk/1.1.1''| |
 |[[guidance-software|guidance]]|2.02|''module load guidance/2.02''| | |[[guidance-software|guidance]]|2.02|''module load guidance/2.02''| |
 |[[hapflk-software|hapflk]]|1.4|''module load hapflk/1.4''| | |[[hapflk-software|hapflk]]|1.4|''module load hapflk/1.4''| |
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 |[[marginalign-software|marginalign]]|git-2369dafd|''module load marginalign/git-2369dafd''| | |[[marginalign-software|marginalign]]|git-2369dafd|''module load marginalign/git-2369dafd''| |
 |[[marginpolish-software|marginpolish]]|1.0.0|''module load marginpolish/1.0.0''| | |[[marginpolish-software|marginpolish]]|1.0.0|''module load marginpolish/1.0.0''| |
-|[[mash-software|mash]]|2.0|''module load mash/2.0''| |+|[[mash-software|mash]]|2.2|''module load mash/2.2''| |
 |[[masurca-software|masurca]]|3.3.1|''module load masurca/3.3.1''| | |[[masurca-software|masurca]]|3.3.1|''module load masurca/3.3.1''| |
 |mauve|2.3.1|''module load mauve/2.3.1''| | |mauve|2.3.1|''module load mauve/2.3.1''| |
Line 200: Line 203:
 |[[pblat-software|pblat]]|2.1|''module load pblat/2.1''| | |[[pblat-software|pblat]]|2.1|''module load pblat/2.1''| |
 |[[pbsuite-software|pbsuite]]|15.8.24|''module load pbsuite/15.8.24''| | |[[pbsuite-software|pbsuite]]|15.8.24|''module load pbsuite/15.8.24''| |
-|[[perl-software|perl]]|5.22.3|''module load perl/5.22.3''| |+|[[perl-software|perl]]|5.28.2|''module load perl/5.28.2''| |
 |[[pgdspider-software|PGDSpider]]|2.1.1.0|''module load pgdspider/2.1.1.0''| | |[[pgdspider-software|PGDSpider]]|2.1.1.0|''module load pgdspider/2.1.1.0''| |
 |phrap|1.080812|''module load phrap/1.080812''| | |phrap|1.080812|''module load phrap/1.080812''| |
Line 219: Line 222:
 |[[prinseq-software|prinseq]]|0.20.4|''module load prinseq/0.20.4''| | |[[prinseq-software|prinseq]]|0.20.4|''module load prinseq/0.20.4''| |
 |[[prodigal-software|prodigal]]|2.6.3|''module load prodigal/2.6.3''| | |[[prodigal-software|prodigal]]|2.6.3|''module load prodigal/2.6.3''| |
-|[[prokka-software|prokka]]|1.11|''module load prokka/1.11''| |+|[[prokka-software|prokka]]|1.14.6|''module load prokka/1.14.6''| |
 |[[provean-software|provean]]|1.1.5|''module load provean/1.1.5''| | |[[provean-software|provean]]|1.1.5|''module load provean/1.1.5''| |
 |[[python-software|python]]|3.7.7|''module load python/3.7''| | |[[python-software|python]]|3.7.7|''module load python/3.7''| |
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 |[[racon-software|racon]]|1.3.1|''module load racon/1.3.1''| | |[[racon-software|racon]]|1.3.1|''module load racon/1.3.1''| |
 |[[rmblast-software|rmblast]]|2.2.28|''module load rmblast/2.2.28''| | |[[rmblast-software|rmblast]]|2.2.28|''module load rmblast/2.2.28''| |
-|rapsearch|2.10|''module load rapsearch/2.10''| |+|[[rapsearch-software|rapsearch]]|2.22|''module load rapsearch/2.22''| |
 |[[ratt-software|RATT]]|r18|''module load ratt/r18''| | |[[ratt-software|RATT]]|r18|''module load ratt/r18''| |
 |[[raxml-software|RAxML]]|8.2.12|''module load RAxML/8.2.12''| | |[[raxml-software|RAxML]]|8.2.12|''module load RAxML/8.2.12''| |
Line 248: Line 251:
 |[[scipio-software|scipio]]|1.4.1|''module load scipio/1.4.1''| | |[[scipio-software|scipio]]|1.4.1|''module load scipio/1.4.1''| |
 |[[scythe-software|scythe]]|0.994-beta|''module load scythe/0.994-beta''| | |[[scythe-software|scythe]]|0.994-beta|''module load scythe/0.994-beta''| |
 +|[[sepp-software|sepp]]|4.3.8|''module load sepp/4.3.8''| |
 |[[seroba-software|seroba]]|1.0.0|''module load seroba/1.0.0''| | |[[seroba-software|seroba]]|1.0.0|''module load seroba/1.0.0''| |
 |seq_crumbs|0.1.8|''module load seq_crumbs/0.1.8''| | |seq_crumbs|0.1.8|''module load seq_crumbs/0.1.8''| |
list-of-software.txt · Last modified: 2024/06/19 11:50 by aorth