list-of-software
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list-of-software [2020/03/15 16:41] – aorth | list-of-software [2020/04/27 14:26] – aorth | ||
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|[[bitseq-software|bitseq]]|0.7.5|'' | |[[bitseq-software|bitseq]]|0.7.5|'' | ||
|[[blasr-software|blasr]]|smrtanalysis-4.0.0|'' | |[[blasr-software|blasr]]|smrtanalysis-4.0.0|'' | ||
- | |[[blast-software|blast]]|2.6.0+|'' | + | |[[blast-software|blast]]|2.10.0+|'' |
|[[blobtools-software|blobtools]]|0.9.19.3|'' | |[[blobtools-software|blobtools]]|0.9.19.3|'' | ||
|blat|06-Aug-2013|'' | |blat|06-Aug-2013|'' | ||
- | |[[bowtie-software|bowtie1 ]]|1.1.1|'' | + | |[[bowtie-software|bowtie1 ]]|1.2.3|'' |
|[[bowtie2-software|bowtie2 ]]|2.3.4.1|'' | |[[bowtie2-software|bowtie2 ]]|2.3.4.1|'' | ||
|[[brig-software|brig]]|0.95|'' | |[[brig-software|brig]]|0.95|'' | ||
Line 55: | Line 55: | ||
|[[changeo-software|changeo]]|0.3.9|'' | |[[changeo-software|changeo]]|0.3.9|'' | ||
|[[checkm-software|checkm]]|1.1.2|'' | |[[checkm-software|checkm]]|1.1.2|'' | ||
- | |[[circos-software|circos]]|0.67|'' | + | |[[circos-software|circos]]|0.69-9|'' |
|[[clonalframe-software|clonalframe]]|1.2|'' | |[[clonalframe-software|clonalframe]]|1.2|'' | ||
|[[clonalframeml-software|clonalframeml]]|1.0|'' | |[[clonalframeml-software|clonalframeml]]|1.0|'' | ||
Line 116: | Line 116: | ||
|[[htslib-software|htslib]]|1.9|'' | |[[htslib-software|htslib]]|1.9|'' | ||
|[[idba-software|idba]]|1.1.2|'' | |[[idba-software|idba]]|1.1.2|'' | ||
- | |[[igblast-software|igblast]]|1.6.0|'' | + | |[[igblast-software|igblast]]|1.10.0|'' |
+ | |[[igdiscover-software|igdiscover]]|0.12.3|'' | ||
|[[igrec-software|igrec]]|3.0.0|'' | |[[igrec-software|igrec]]|3.0.0|'' | ||
+ | |[[igsimulator-software|igsimulator]]|git-c3778b74|'' | ||
|[[igv-software|igv]]|2.4.5|'' | |[[igv-software|igv]]|2.4.5|'' | ||
|[[igvtools-software|igvtools]]|2.3.98|'' | |[[igvtools-software|igvtools]]|2.3.98|'' | ||
Line 165: | Line 167: | ||
|[[minimap2-software|minimap2]]|2.13|'' | |[[minimap2-software|minimap2]]|2.13|'' | ||
|[[minpath-software|MinPath]]|1.0.2|'' | |[[minpath-software|MinPath]]|1.0.2|'' | ||
- | |[[mira-software# | + | |[[mira-software# |
+ | |[[mirdeep2-software|mirdeep2]]|0.1.3|'' | ||
|[[mitools-software|mitools]]|1.4|'' | |[[mitools-software|mitools]]|1.4|'' | ||
|[[mixcr-software|mixcr]]|3.0.11|'' | |[[mixcr-software|mixcr]]|3.0.11|'' | ||
Line 175: | Line 178: | ||
|mrbayes|3.2.2|'' | |mrbayes|3.2.2|'' | ||
|[[multiqc-software|multiqc]]|1.4|'' | |[[multiqc-software|multiqc]]|1.4|'' | ||
- | |[[muscle-software|muscle]]|3.8.31|'' | + | |[[muscle-software|muscle]]|3.8.1551|'' |
|[[mummer-software|MUMmer]]|3.23|'' | |[[mummer-software|MUMmer]]|3.23|'' | ||
|[[nanopolish-software|nanopolish]]|0.10.2|'' | |[[nanopolish-software|nanopolish]]|0.10.2|'' | ||
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|[[pandaseq-software|pandaseq]]|2.8.1|'' | |[[pandaseq-software|pandaseq]]|2.8.1|'' | ||
|[[pasta-software|pasta]]|d939adb2|'' | |[[pasta-software|pasta]]|d939adb2|'' | ||
- | |[[pear-software|pear]]|git-2c309dc|'' | + | |[[pear-software|pear]]|0.9.6|'' |
|[[pblat-software|pblat]]|2.1|'' | |[[pblat-software|pblat]]|2.1|'' | ||
|[[pbsuite-software|pbsuite]]|15.8.24|'' | |[[pbsuite-software|pbsuite]]|15.8.24|'' | ||
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|[[presto-software|presto]]|0.5.13|'' | |[[presto-software|presto]]|0.5.13|'' | ||
|primer3|2.3.6|'' | |primer3|2.3.6|'' | ||
+ | |[[prinseq-software|prinseq]]|0.20.4|'' | ||
|[[prodigal-software|prodigal]]|2.6.3|'' | |[[prodigal-software|prodigal]]|2.6.3|'' | ||
|[[prokka-software|prokka]]|1.11|'' | |[[prokka-software|prokka]]|1.11|'' | ||
|[[provean-software|provean]]|1.1.5|'' | |[[provean-software|provean]]|1.1.5|'' | ||
- | |[[python-software|python]]|3.7.2|'' | + | |[[python-software|python]]|3.7.7|'' |
|qdd|3_beta|'' | |qdd|3_beta|'' | ||
|[[qiime-software|qiime]]|1.9.1|'' | |[[qiime-software|qiime]]|1.9.1|'' | ||
|[[qiime2-software|qiime2]]|2019.10|'' | |[[qiime2-software|qiime2]]|2019.10|'' | ||
- | |[[quast-software|quast]]|4.5|'' | + | |[[quast-software|quast]]|5.0.2|'' |
|[[quickmerge-software|quickmerge]]|0.3|'' | |[[quickmerge-software|quickmerge]]|0.3|'' | ||
|[[quorum-software|Quorum]]|1.1.1|'' | |[[quorum-software|Quorum]]|1.1.1|'' | ||
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|[[rdp-classifier-software|RDP Classifier]]|2.11|'' | |[[rdp-classifier-software|RDP Classifier]]|2.11|'' | ||
|repeatmasker|4.0.5|'' | |repeatmasker|4.0.5|'' | ||
+ | |[[repseqio-software|repseqio]]|1.3.3|'' | ||
|[[root-software|root]]|6.08.06|'' | |[[root-software|root]]|6.08.06|'' | ||
|[[rrnaselector-software|rRNASelector]]|1.1|'' | |[[rrnaselector-software|rRNASelector]]|1.1|'' | ||
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|splitstree|4.11.3|'' | |splitstree|4.11.3|'' | ||
|spread|1.0.6|'' | |spread|1.0.6|'' | ||
+ | |[[squid-software|squid]]|1.9g|'' | ||
|[[sratoolkit-software|sratoolkit]]|2.10.0|'' | |[[sratoolkit-software|sratoolkit]]|2.10.0|'' | ||
|[[sspace-software|sspace]]|3.0|'' | |[[sspace-software|sspace]]|3.0|'' | ||
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|[[velvet-software|velvet]]|1.2.10-kmer111|'' | |[[velvet-software|velvet]]|1.2.10-kmer111|'' | ||
|[[vep-software|vep]]|92.1|'' | |[[vep-software|vep]]|92.1|'' | ||
- | |[[vsearch-software|vsearch]]|2.8.0|'' | + | |[[viennarna-software|viennarna]]|2.4.14|'' |
|[[virusdetect-software|virusdetect]]|1.7|'' | |[[virusdetect-software|virusdetect]]|1.7|'' | ||
|[[vntrseek-software|vntrseek]]|1.08|'' | |[[vntrseek-software|vntrseek]]|1.08|'' | ||
+ | |[[vsearch-software|vsearch]]|2.8.0|'' | ||
|[[w2rap-software|w2rap]]|git-60781b6c|'' | |[[w2rap-software|w2rap]]|git-60781b6c|'' | ||
|[[w2rap-contigger-software|w2rap-contigger]]|git-a43f5a05|'' | |[[w2rap-contigger-software|w2rap-contigger]]|git-a43f5a05|'' |
list-of-software.txt · Last modified: 2024/06/19 11:50 by aorth