list-of-software
Differences
This shows you the differences between two versions of the page.
| Both sides previous revisionPrevious revisionNext revision | Previous revisionNext revisionBoth sides next revision | ||
| list-of-software [2020/03/15 09:06] – aorth | list-of-software [2020/04/16 11:15] – aorth | ||
|---|---|---|---|
| Line 37: | Line 37: | ||
| |[[bitseq-software|bitseq]]|0.7.5|'' | |[[bitseq-software|bitseq]]|0.7.5|'' | ||
| |[[blasr-software|blasr]]|smrtanalysis-4.0.0|'' | |[[blasr-software|blasr]]|smrtanalysis-4.0.0|'' | ||
| - | |[[blast-software|blast]]|2.6.0+|'' | + | |[[blast-software|blast]]|2.10.0+|'' |
| |[[blobtools-software|blobtools]]|0.9.19.3|'' | |[[blobtools-software|blobtools]]|0.9.19.3|'' | ||
| |blat|06-Aug-2013|'' | |blat|06-Aug-2013|'' | ||
| Line 55: | Line 55: | ||
| |[[changeo-software|changeo]]|0.3.9|'' | |[[changeo-software|changeo]]|0.3.9|'' | ||
| |[[checkm-software|checkm]]|1.1.2|'' | |[[checkm-software|checkm]]|1.1.2|'' | ||
| - | |[[circos-software|circos]]|0.67|'' | + | |[[circos-software|circos]]|0.69-9|'' |
| |[[clonalframe-software|clonalframe]]|1.2|'' | |[[clonalframe-software|clonalframe]]|1.2|'' | ||
| |[[clonalframeml-software|clonalframeml]]|1.0|'' | |[[clonalframeml-software|clonalframeml]]|1.0|'' | ||
| Line 110: | Line 110: | ||
| |hapmix|2.0|'' | |hapmix|2.0|'' | ||
| |[[hdf5-software|hdf5]]|1.8.19|'' | |[[hdf5-software|hdf5]]|1.8.19|'' | ||
| - | |[[hmmer-software|hmmer]]|3.1b2|'' | + | |[[hmmer-software|hmmer]]|3.3|'' |
| |[[hpg-variant-software|hpg-variant]]|1.0|'' | |[[hpg-variant-software|hpg-variant]]|1.0|'' | ||
| |[[hisat2-software|hisat2]]|2.1.0|'' | |[[hisat2-software|hisat2]]|2.1.0|'' | ||
| |[[htseq-software|htseq]]|0.9.1|'' | |[[htseq-software|htseq]]|0.9.1|'' | ||
| |[[htslib-software|htslib]]|1.9|'' | |[[htslib-software|htslib]]|1.9|'' | ||
| - | |[[igblast-software|igblast]]|1.6.0|'' | + | |[[idba-software|idba]]|1.1.2|'' |
| + | |[[igblast-software|igblast]]|1.10.0|'' | ||
| |[[igrec-software|igrec]]|3.0.0|'' | |[[igrec-software|igrec]]|3.0.0|'' | ||
| + | |[[igsimulator-software|igsimulator]]|git-c3778b74|'' | ||
| |[[igv-software|igv]]|2.4.5|'' | |[[igv-software|igv]]|2.4.5|'' | ||
| |[[igvtools-software|igvtools]]|2.3.98|'' | |[[igvtools-software|igvtools]]|2.3.98|'' | ||
| Line 148: | Line 150: | ||
| |[[masurca-software|masurca]]|3.3.1|'' | |[[masurca-software|masurca]]|3.3.1|'' | ||
| |mauve|2.3.1|'' | |mauve|2.3.1|'' | ||
| + | |[[maxbin2-software|maxbin2]]|2.2.7|'' | ||
| |maximus|0.2|'' | |maximus|0.2|'' | ||
| |[[mcl-software|mcl]]|14-137|'' | |[[mcl-software|mcl]]|14-137|'' | ||
| Line 173: | Line 176: | ||
| |mrbayes|3.2.2|'' | |mrbayes|3.2.2|'' | ||
| |[[multiqc-software|multiqc]]|1.4|'' | |[[multiqc-software|multiqc]]|1.4|'' | ||
| - | |[[muscle-software|muscle]]|3.8.31|'' | + | |[[muscle-software|muscle]]|3.8.1551|'' |
| |[[mummer-software|MUMmer]]|3.23|'' | |[[mummer-software|MUMmer]]|3.23|'' | ||
| |[[nanopolish-software|nanopolish]]|0.10.2|'' | |[[nanopolish-software|nanopolish]]|0.10.2|'' | ||
| Line 192: | Line 195: | ||
| |[[pandaseq-software|pandaseq]]|2.8.1|'' | |[[pandaseq-software|pandaseq]]|2.8.1|'' | ||
| |[[pasta-software|pasta]]|d939adb2|'' | |[[pasta-software|pasta]]|d939adb2|'' | ||
| - | |[[pear-software|pear]]|git-2c309dc|'' | + | |[[pear-software|pear]]|0.9.6|'' |
| |[[pblat-software|pblat]]|2.1|'' | |[[pblat-software|pblat]]|2.1|'' | ||
| |[[pbsuite-software|pbsuite]]|15.8.24|'' | |[[pbsuite-software|pbsuite]]|15.8.24|'' | ||
| Line 210: | Line 213: | ||
| |[[pplacer-software|pplacer]]|1.1.alpha19|'' | |[[pplacer-software|pplacer]]|1.1.alpha19|'' | ||
| |[[prank-software|prank]]|170427|'' | |[[prank-software|prank]]|170427|'' | ||
| - | |[[presto-software|presto]]|0.5.3|'' | + | |[[presto-software|presto]]|0.5.13|'' |
| |primer3|2.3.6|'' | |primer3|2.3.6|'' | ||
| |[[prodigal-software|prodigal]]|2.6.3|'' | |[[prodigal-software|prodigal]]|2.6.3|'' | ||
| |[[prokka-software|prokka]]|1.11|'' | |[[prokka-software|prokka]]|1.11|'' | ||
| |[[provean-software|provean]]|1.1.5|'' | |[[provean-software|provean]]|1.1.5|'' | ||
| - | |[[python-software|python]]|3.7.2|'' | + | |[[python-software|python]]|3.7.7|'' |
| |qdd|3_beta|'' | |qdd|3_beta|'' | ||
| |[[qiime-software|qiime]]|1.9.1|'' | |[[qiime-software|qiime]]|1.9.1|'' | ||
| |[[qiime2-software|qiime2]]|2019.10|'' | |[[qiime2-software|qiime2]]|2019.10|'' | ||
| - | |[[quast-software|quast]]|4.5|'' | + | |[[quast-software|quast]]|5.0.2|'' |
| |[[quickmerge-software|quickmerge]]|0.3|'' | |[[quickmerge-software|quickmerge]]|0.3|'' | ||
| |[[quorum-software|Quorum]]|1.1.1|'' | |[[quorum-software|Quorum]]|1.1.1|'' | ||
| Line 231: | Line 234: | ||
| |[[rdp-classifier-software|RDP Classifier]]|2.11|'' | |[[rdp-classifier-software|RDP Classifier]]|2.11|'' | ||
| |repeatmasker|4.0.5|'' | |repeatmasker|4.0.5|'' | ||
| + | |[[repseqio-software|repseqio]]|1.3.3|'' | ||
| |[[root-software|root]]|6.08.06|'' | |[[root-software|root]]|6.08.06|'' | ||
| |[[rrnaselector-software|rRNASelector]]|1.1|'' | |[[rrnaselector-software|rRNASelector]]|1.1|'' | ||
| Line 247: | Line 251: | ||
| |[[seqtk-software|seqtk]]|1.3|'' | |[[seqtk-software|seqtk]]|1.3|'' | ||
| |[[shannon-software|shannon]]|0.0.2|'' | |[[shannon-software|shannon]]|0.0.2|'' | ||
| - | |[[shasta-software|shasta]]|0.3.0|'' | + | |[[shasta-software|shasta]]|0.4.0|'' |
| |[[sickle-software|sickle]]|1.33|'' | |[[sickle-software|sickle]]|1.33|'' | ||
| |[[sift-software|sift]]|4.0.3b|'' | |[[sift-software|sift]]|4.0.3b|'' | ||
list-of-software.txt · Last modified: 2024/06/19 11:50 by aorth