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list-of-software

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list-of-software [2020/03/12 14:24] – aorthlist-of-software [2020/03/19 09:49] – aorth
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 |censor|4.2.28|''module load censor/4.2.28''| | |censor|4.2.28|''module load censor/4.2.28''| |
 |[[changeo-software|changeo]]|0.3.9|''module load changeo/0.3.9''| | |[[changeo-software|changeo]]|0.3.9|''module load changeo/0.3.9''| |
 +|[[checkm-software|checkm]]|1.1.2|''module load checkm/1.1.2''| |
 |[[circos-software|circos]]|0.67|''module load circos/0.67''| | |[[circos-software|circos]]|0.67|''module load circos/0.67''| |
 |[[clonalframe-software|clonalframe]]|1.2|''module load clonalframe/1.2''| | |[[clonalframe-software|clonalframe]]|1.2|''module load clonalframe/1.2''| |
Line 89: Line 90:
 |[[flye-software|flye]]|2.4.2|''module load flye/2.4.2''| | |[[flye-software|flye]]|2.4.2|''module load flye/2.4.2''| |
 |frappe|1.1|''module load frappe/1.1''| | |frappe|1.1|''module load frappe/1.1''| |
-|[[fraggenescan-software|FragGeneScan ]]|1.19|''module load fraggenescan/1.19''| |+|[[fraggenescan-software|FragGeneScan ]]|1.30|''module load fraggenescan/1.30''| |
 |[[freebayes-software|FreeBayes ]]|1.0.2|''module load freebayes/1.0.2''| | |[[freebayes-software|FreeBayes ]]|1.0.2|''module load freebayes/1.0.2''| |
 |[[gassflow-software|GassFlow ]]|1.0|''module load gassflow/1.0''| | |[[gassflow-software|GassFlow ]]|1.0|''module load gassflow/1.0''| |
Line 109: Line 110:
 |hapmix|2.0|''module load hapmix/2.0''| | |hapmix|2.0|''module load hapmix/2.0''| |
 |[[hdf5-software|hdf5]]|1.8.19|''module load hdf5/1.8.19''| | |[[hdf5-software|hdf5]]|1.8.19|''module load hdf5/1.8.19''| |
-|[[hmmer-software|hmmer]]|3.1b2|''module load hmmer/3.1b2''| |+|[[hmmer-software|hmmer]]|3.3|''module load hmmer/3.3''| |
 |[[hpg-variant-software|hpg-variant]]|1.0|''module load hpg-variant/1.0''| | |[[hpg-variant-software|hpg-variant]]|1.0|''module load hpg-variant/1.0''| |
 |[[hisat2-software|hisat2]]|2.1.0|''module load hisat2/2.1.0''| | |[[hisat2-software|hisat2]]|2.1.0|''module load hisat2/2.1.0''| |
 |[[htseq-software|htseq]]|0.9.1|''module load htseq/0.9.1''| | |[[htseq-software|htseq]]|0.9.1|''module load htseq/0.9.1''| |
 |[[htslib-software|htslib]]|1.9|''module load htslib/1.9''| | |[[htslib-software|htslib]]|1.9|''module load htslib/1.9''| |
 +|[[idba-software|idba]]|1.1.2|''module load idba/1.1.2''| |
 |[[igblast-software|igblast]]|1.6.0|''module load igblast/1.6.0''| | |[[igblast-software|igblast]]|1.6.0|''module load igblast/1.6.0''| |
 |[[igrec-software|igrec]]|3.0.0|''module load igrec/3.0.0''| | |[[igrec-software|igrec]]|3.0.0|''module load igrec/3.0.0''| |
Line 147: Line 149:
 |[[masurca-software|masurca]]|3.3.1|''module load masurca/3.3.1''| | |[[masurca-software|masurca]]|3.3.1|''module load masurca/3.3.1''| |
 |mauve|2.3.1|''module load mauve/2.3.1''| | |mauve|2.3.1|''module load mauve/2.3.1''| |
 +|[[maxbin2-software|maxbin2]]|2.2.7|''module load maxbin2/2.2.7''| |
 |maximus|0.2|''module load maximus/0.2''| | |maximus|0.2|''module load maximus/0.2''| |
 |[[mcl-software|mcl]]|14-137|''module load mcl/14-137''| | |[[mcl-software|mcl]]|14-137|''module load mcl/14-137''| |
Line 207: Line 210:
 |[[polyphen-software|polyphen]]|2.2.2|''module load polyphen/2.2.2''| | |[[polyphen-software|polyphen]]|2.2.2|''module load polyphen/2.2.2''| |
 |[[porechop-software|porechop]]|0.2.4|''module load porechop/0.2.4''| | |[[porechop-software|porechop]]|0.2.4|''module load porechop/0.2.4''| |
 +|[[pplacer-software|pplacer]]|1.1.alpha19|''module load pplacer/1.1.alpha19''| |
 |[[prank-software|prank]]|170427|''module load prank/170427''| | |[[prank-software|prank]]|170427|''module load prank/170427''| |
-|[[presto-software|presto]]|0.5.3|''module load presto/0.5.3''| |+|[[presto-software|presto]]|0.5.13|''module load presto/0.5.13''| |
 |primer3|2.3.6|''module load primer3/2.3.6''| | |primer3|2.3.6|''module load primer3/2.3.6''| |
 +|[[prodigal-software|prodigal]]|2.6.3|''module load prodigal/2.6.3''| |
 |[[prokka-software|prokka]]|1.11|''module load prokka/1.11''| | |[[prokka-software|prokka]]|1.11|''module load prokka/1.11''| |
 |[[provean-software|provean]]|1.1.5|''module load provean/1.1.5''| | |[[provean-software|provean]]|1.1.5|''module load provean/1.1.5''| |
Line 228: Line 233:
 |[[rdp-classifier-software|RDP Classifier]]|2.11|''module load rdp-classifier/2.11''| | |[[rdp-classifier-software|RDP Classifier]]|2.11|''module load rdp-classifier/2.11''| |
 |repeatmasker|4.0.5|''module load repeatmasker/4.0.5''| | |repeatmasker|4.0.5|''module load repeatmasker/4.0.5''| |
 +|[[repseqio-software|repseqio]]|1.3.3|''module load repseqio/1.3.3''| |
 |[[root-software|root]]|6.08.06|''module load root/6.08.06''| | |[[root-software|root]]|6.08.06|''module load root/6.08.06''| |
 |[[rrnaselector-software|rRNASelector]]|1.1|''module load rrnaselector/1.1''| | |[[rrnaselector-software|rRNASelector]]|1.1|''module load rrnaselector/1.1''| |
Line 244: Line 250:
 |[[seqtk-software|seqtk]]|1.3|''module load seqtk/1.3''| | |[[seqtk-software|seqtk]]|1.3|''module load seqtk/1.3''| |
 |[[shannon-software|shannon]]|0.0.2|''module load shannon/0.0.2''| | |[[shannon-software|shannon]]|0.0.2|''module load shannon/0.0.2''| |
-|[[shasta-software|shasta]]|0.3.0|''module load shasta/0.3.0''| |+|[[shasta-software|shasta]]|0.4.0|''module load shasta/0.4.0''| |
 |[[sickle-software|sickle]]|1.33|''module load sickle/1.33''| | |[[sickle-software|sickle]]|1.33|''module load sickle/1.33''| |
 |[[sift-software|sift]]|4.0.3b|''module load sift/4.0.3b''| | |[[sift-software|sift]]|4.0.3b|''module load sift/4.0.3b''| |
list-of-software.txt · Last modified: 2024/06/19 11:50 by aorth