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list-of-software

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list-of-software [2020/02/03 20:54] – aorthlist-of-software [2020/03/12 14:28] – aorth
Line 54: Line 54:
 |censor|4.2.28|''module load censor/4.2.28''| | |censor|4.2.28|''module load censor/4.2.28''| |
 |[[changeo-software|changeo]]|0.3.9|''module load changeo/0.3.9''| | |[[changeo-software|changeo]]|0.3.9|''module load changeo/0.3.9''| |
 +|[[checkm-software|checkm]]|1.1.2|''module load checkm/1.1.2''| |
 |[[circos-software|circos]]|0.67|''module load circos/0.67''| | |[[circos-software|circos]]|0.67|''module load circos/0.67''| |
 |[[clonalframe-software|clonalframe]]|1.2|''module load clonalframe/1.2''| | |[[clonalframe-software|clonalframe]]|1.2|''module load clonalframe/1.2''| |
Line 68: Line 69:
 |dendroscope|2.7.4|''module load dendroscope/2.7.4''| | |dendroscope|2.7.4|''module load dendroscope/2.7.4''| |
 |[[diamond-software|diamond]]|0.9.9|''module load diamond/0.9.9''| | |[[diamond-software|diamond]]|0.9.9|''module load diamond/0.9.9''| |
 +|[[drep-software|drep]]|2.5.4|''module load drep/2.5.4''| |
 |[[ea-utils-software|ea-utils]]|1.04.807|''module load ea-utils/1.04.807''| | |[[ea-utils-software|ea-utils]]|1.04.807|''module load ea-utils/1.04.807''| |
 |[[edirect-software|edirect]]| 7.80 | ''module load edirect/7.80'' | | |[[edirect-software|edirect]]| 7.80 | ''module load edirect/7.80'' | |
Line 176: Line 178:
 |[[netmhcpan-software|netmhcpan]]|2.8|''module load netmhcpan/2.8''| | |[[netmhcpan-software|netmhcpan]]|2.8|''module load netmhcpan/2.8''| |
 |[[nextclip-software|nextclip]]|1.3.1|''module load nextclip/1.3.1''| | |[[nextclip-software|nextclip]]|1.3.1|''module load nextclip/1.3.1''| |
 +|[[nextflow-software|nextflow]]|19.10.0|''module load nextflow/19.10.0''| |
 |[[ntcard-software|ntCard]]|1.0.0|''module load ntCard/1.0.0''| | |[[ntcard-software|ntCard]]|1.0.0|''module load ntCard/1.0.0''| |
 |[[ngsqctoolkit-software|ngsqctoolkit]]|2.3.3|''module load ngsqctoolkit/2.3.3''| | |[[ngsqctoolkit-software|ngsqctoolkit]]|2.3.3|''module load ngsqctoolkit/2.3.3''| |
Line 204: Line 207:
 |[[plink-software|plink]]|2.00-alpha|''module load plink/2.00-alpha''| | |[[plink-software|plink]]|2.00-alpha|''module load plink/2.00-alpha''| |
 |[[polyphen-software|polyphen]]|2.2.2|''module load polyphen/2.2.2''| | |[[polyphen-software|polyphen]]|2.2.2|''module load polyphen/2.2.2''| |
 +|[[porechop-software|porechop]]|0.2.4|''module load porechop/0.2.4''| |
 |[[prank-software|prank]]|170427|''module load prank/170427''| | |[[prank-software|prank]]|170427|''module load prank/170427''| |
 |[[presto-software|presto]]|0.5.3|''module load presto/0.5.3''| | |[[presto-software|presto]]|0.5.3|''module load presto/0.5.3''| |
Line 301: Line 305:
 |[[whatshap-software|whatshap]]|0.16|''module load whatshap/0.16''| | |[[whatshap-software|whatshap]]|0.16|''module load whatshap/0.16''| |
 |[[wise-software|wise]]|2.4.1|''module load wise/2.4.1''| | |[[wise-software|wise]]|2.4.1|''module load wise/2.4.1''| |
 +|[[wombat-software|wombat]]|2020-02-07|''module load wombat/2020-02-07''| |
 |[[wtdbg2-software|wtdbg2]]|2.4|''module load wtdbg2/2.4''| | |[[wtdbg2-software|wtdbg2]]|2.4|''module load wtdbg2/2.4''| |
  
 The source code for all environment modules can be found in [[https://github.com/ilri/hpc-environment-modules|ILRI's GitHub repository]]. The source code for all environment modules can be found in [[https://github.com/ilri/hpc-environment-modules|ILRI's GitHub repository]].
list-of-software.txt · Last modified: 2024/06/19 11:50 by aorth