list-of-software
Differences
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| Both sides previous revisionPrevious revisionNext revision | Previous revisionNext revisionBoth sides next revision | ||
| list-of-software [2019/11/19 12:59] – aorth | list-of-software [2020/03/12 14:24] – aorth | ||
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| |[[artemis-software|artemis]]|16.0.0|'' | |[[artemis-software|artemis]]|16.0.0|'' | ||
| |[[augustus-software|augustus]]|3.3|'' | |[[augustus-software|augustus]]|3.3|'' | ||
| + | |[[awscli-software|awscli]]|1.17.9|'' | ||
| |[[bam-readcount-software|bam-readcount]]|0.8.0|'' | |[[bam-readcount-software|bam-readcount]]|0.8.0|'' | ||
| |[[bamtools-software|bamtools]]|2.5.1|'' | |[[bamtools-software|bamtools]]|2.5.1|'' | ||
| Line 67: | Line 68: | ||
| |dendroscope|2.7.4|'' | |dendroscope|2.7.4|'' | ||
| |[[diamond-software|diamond]]|0.9.9|'' | |[[diamond-software|diamond]]|0.9.9|'' | ||
| + | |[[drep-software|drep]]|2.5.4|'' | ||
| |[[ea-utils-software|ea-utils]]|1.04.807|'' | |[[ea-utils-software|ea-utils]]|1.04.807|'' | ||
| |[[edirect-software|edirect]]| 7.80 | '' | |[[edirect-software|edirect]]| 7.80 | '' | ||
| Line 153: | Line 155: | ||
| |[[megax-software|megax]]|10.0.5|'' | |[[megax-software|megax]]|10.0.5|'' | ||
| |[[metabat-software|metabat]]|2.12.1|'' | |[[metabat-software|metabat]]|2.12.1|'' | ||
| + | |[[metaphlan2-software|metaphlan2]]|2.9.5|'' | ||
| |[[metis-software|metis]]|5.1.0|'' | |[[metis-software|metis]]|5.1.0|'' | ||
| |[[migec-software|migec]]|1.2.4a|'' | |[[migec-software|migec]]|1.2.4a|'' | ||
| Line 174: | Line 177: | ||
| |[[netmhcpan-software|netmhcpan]]|2.8|'' | |[[netmhcpan-software|netmhcpan]]|2.8|'' | ||
| |[[nextclip-software|nextclip]]|1.3.1|'' | |[[nextclip-software|nextclip]]|1.3.1|'' | ||
| + | |[[nextflow-software|nextflow]]|19.10.0|'' | ||
| |[[ntcard-software|ntCard]]|1.0.0|'' | |[[ntcard-software|ntCard]]|1.0.0|'' | ||
| |[[ngsqctoolkit-software|ngsqctoolkit]]|2.3.3|'' | |[[ngsqctoolkit-software|ngsqctoolkit]]|2.3.3|'' | ||
| Line 200: | Line 204: | ||
| |[[pilon-software|pilon]]|1.23|'' | |[[pilon-software|pilon]]|1.23|'' | ||
| |[[platanus-software|platanus]]|1.2.1|'' | |[[platanus-software|platanus]]|1.2.1|'' | ||
| - | |[[plink-software|plink]]|1.9|'' | + | |[[plink-software|plink]]|2.00-alpha|'' |
| |[[polyphen-software|polyphen]]|2.2.2|'' | |[[polyphen-software|polyphen]]|2.2.2|'' | ||
| + | |[[porechop-software|porechop]]|0.2.4|'' | ||
| |[[prank-software|prank]]|170427|'' | |[[prank-software|prank]]|170427|'' | ||
| |[[presto-software|presto]]|0.5.3|'' | |[[presto-software|presto]]|0.5.3|'' | ||
| Line 210: | Line 215: | ||
| |qdd|3_beta|'' | |qdd|3_beta|'' | ||
| |[[qiime-software|qiime]]|1.9.1|'' | |[[qiime-software|qiime]]|1.9.1|'' | ||
| - | |[[qiime2-software|qiime2]]|2019.7|'' | + | |[[qiime2-software|qiime2]]|2019.10|'' |
| |[[quast-software|quast]]|4.5|'' | |[[quast-software|quast]]|4.5|'' | ||
| |[[quickmerge-software|quickmerge]]|0.3|'' | |[[quickmerge-software|quickmerge]]|0.3|'' | ||
| Line 261: | Line 266: | ||
| |splitstree|4.11.3|'' | |splitstree|4.11.3|'' | ||
| |spread|1.0.6|'' | |spread|1.0.6|'' | ||
| - | |[[sratoolkit-software|sratoolkit]]|2.8.2|'' | + | |[[sratoolkit-software|sratoolkit]]|2.10.0|'' |
| |[[sspace-software|sspace]]|3.0|'' | |[[sspace-software|sspace]]|3.0|'' | ||
| |[[sspace-longread-software|sspace-longread]]|1.1|'' | |[[sspace-longread-software|sspace-longread]]|1.1|'' | ||
| Line 299: | Line 304: | ||
| |[[whatshap-software|whatshap]]|0.16|'' | |[[whatshap-software|whatshap]]|0.16|'' | ||
| |[[wise-software|wise]]|2.4.1|'' | |[[wise-software|wise]]|2.4.1|'' | ||
| + | |[[wombat-software|wombat]]|2020-02-07|'' | ||
| |[[wtdbg2-software|wtdbg2]]|2.4|'' | |[[wtdbg2-software|wtdbg2]]|2.4|'' | ||
| The source code for all environment modules can be found in [[https:// | The source code for all environment modules can be found in [[https:// | ||
list-of-software.txt · Last modified: 2024/06/19 11:50 by aorth