kraken-software
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kraken-software [2016/08/16 05:21] – created joguya | kraken-software [2023/08/11 10:13] (current) – aorth | ||
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===== Information ===== | ===== Information ===== | ||
- | * Version: | + | * Version: |
* Added: August, 2016 | * Added: August, 2016 | ||
- | * Link: https:// | + | |
+ | | ||
===== Usage ===== | ===== Usage ===== | ||
- | See which versions | + | See which versions are available: |
< | < | ||
- | Load kraken | + | Load one version into your environment and run it: |
- | < | + | < |
+ | $ kraken2 --help</ | ||
===== Installation ====== | ===== Installation ====== | ||
Line 21: | Line 23: | ||
Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
- | < | + | < |
- | $ cd /tmp/ | + | $ git clone https:// |
- | $ wget https:// | + | $ git checkout v2.1.2 |
- | $ tar -xvf v0.10.5-beta.tar.gz | + | $ sudo mkdir -p / |
- | $ cd kraken-0.10.5-beta/ | + | $ sudo chown aorth / |
- | $ sudo mkdir -p / | + | $ ./ |
- | $ sudo chown joguya: | + | $ sudo chown root / |
- | $ scl enable devtoolset-2 bash | + | |
- | $ ./install_kraken.sh /export/apps/kraken/0.10.5/ | + | Download some [[https:// |
- | $ sudo chown -R root: | + | |
- | </ | + | < |
+ | $ wget https:// | ||
+ | $ wget https://genome-idx.s3.amazonaws.com/kraken/16S_Silva132_20200326.tgz | ||
+ | $ wget https:// | ||
+ | $ for name in *.tgz; do sudo tar xfv " | ||
+ | |||
+ | Download several larger databases (careful about space!): | ||
+ | |||
+ | < | ||
+ | $ wget https:// | ||
+ | |||
+ | The '' |
kraken-software.1471324915.txt.gz · Last modified: 2016/08/16 05:21 by joguya