kraken-software
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| Next revision | Previous revision | ||
| kraken-software [2016/08/16 05:21] – created joguya | kraken-software [2023/08/11 10:13] (current) – aorth | ||
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| Line 5: | Line 5: | ||
| ===== Information ===== | ===== Information ===== | ||
| - | * Version: | + | * Version: |
| * Added: August, 2016 | * Added: August, 2016 | ||
| - | * Link: https:// | + | |
| + | | ||
| ===== Usage ===== | ===== Usage ===== | ||
| - | See which versions | + | See which versions are available: |
| < | < | ||
| - | Load kraken | + | Load one version into your environment and run it: |
| - | < | + | < |
| + | $ kraken2 --help</ | ||
| ===== Installation ====== | ===== Installation ====== | ||
| Line 21: | Line 23: | ||
| Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
| - | < | + | < |
| - | $ cd /tmp/ | + | $ git clone https:// |
| - | $ wget https:// | + | $ git checkout v2.1.2 |
| - | $ tar -xvf v0.10.5-beta.tar.gz | + | $ sudo mkdir -p / |
| - | $ cd kraken-0.10.5-beta/ | + | $ sudo chown aorth / |
| - | $ sudo mkdir -p / | + | $ ./ |
| - | $ sudo chown joguya: | + | $ sudo chown root / |
| - | $ scl enable devtoolset-2 bash | + | |
| - | $ ./install_kraken.sh /export/apps/kraken/0.10.5/ | + | Download some [[https:// |
| - | $ sudo chown -R root: | + | |
| - | </ | + | < |
| + | $ wget https:// | ||
| + | $ wget https://genome-idx.s3.amazonaws.com/kraken/16S_Silva132_20200326.tgz | ||
| + | $ wget https:// | ||
| + | $ for name in *.tgz; do sudo tar xfv " | ||
| + | |||
| + | Download several larger databases (careful about space!): | ||
| + | |||
| + | < | ||
| + | $ wget https:// | ||
| + | |||
| + | The '' | ||
kraken-software.1471324915.txt.gz · Last modified: by joguya