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--- kraken-software [2023/08/11 10:08] – aorth
+++ kraken-software [2023/08/11 10:12] – aorth
@@ Line 39: / Line 39: @@
 $ for name in *.tgz; do sudo tar xfv "$name" -C /export/data/bio/kraken2/db; done</code>
-Download the larger standard pre-formatted database:
+Download several larger databases (careful about space!):
-<code>$ wget https://genome-idx.s3.amazonaws.com/kraken/k2_standard_20210517.tar.gz
+<code>$ wget https://genome-idx.s3.amazonaws.com/kraken/k2_standard_20230605.tar.gz
-$ tar xf k2_standard_20210517.tar.gz
+https://genome-idx.s3.amazonaws.com/kraken/k2_nt_20230502.tar.gz</code>
-$ sudo mkdir -p /export/data/bio/kraken2/db/standard
-$ sudo cp database* hash.k2d inspect.txt opts.k2d seqid2taxid.map taxo.k2d /export/data/bio/kraken2/db/standard</code>
 The ''kraken2'' application finds these with the ''KRAKEN2_DB_PATH'' environment variable.