Differences

This shows you the differences between two versions of the page.

--- kraken-software [2023/08/11 09:50] – aorth
+++ kraken-software [2023/08/11 10:08] – aorth
@@ Line 33: / Line 33: @@
 Download some [[https://benlangmead.github.io/aws-indexes/k2|pre-formatted databases]] and extract them somewhere:
-<code>$ sudo mkdir -p /export/data/bio/kraken2/db
+<code>$ cd /var/scratch
-$ wget ftp://ftp.ccb.jhu.edu/pub/data/kraken2_dbs/16S_Greengenes_20190418.tgz
+$ wget https://genome-idx.s3.amazonaws.com/kraken/16S_Greengenes13.5_20200326.tgz
-$ wget ftp://ftp.ccb.jhu.edu/pub/data/kraken2_dbs/minikraken2_v1_8GB_201904_UPDATE.tgz
+$ wget https://genome-idx.s3.amazonaws.com/kraken/16S_Silva132_20200326.tgz
-$ wget ftp://ftp.ccb.jhu.edu/pub/data/kraken2_dbs/minikraken2_v2_8GB_201904_UPDATE.tgz
+$ wget https://genome-idx.s3.amazonaws.com/kraken/16S_Silva138_20200326.tgz
 $ for name in *.tgz; do sudo tar xfv "$name" -C /export/data/bio/kraken2/db; done</code>