ILRI Research Computing

User Tools

Site Tools

You are here: start » kraken-software
kraken-software

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revisionPrevious revision
Next revisionBoth sides next revision
kraken-software [2022/03/03 08:46] – aorthkraken-software [2022/03/03 09:05] – aorth
Line 43: Line 43:
 <code>$ wget https://genome-idx.s3.amazonaws.com/kraken/k2_standard_20210517.tar.gz <code>$ wget https://genome-idx.s3.amazonaws.com/kraken/k2_standard_20210517.tar.gz
 $ tar xf k2_standard_20210517.tar.gz $ tar xf k2_standard_20210517.tar.gz
-</code>+$ sudo mkdir -p /export/data/bio/kraken2/db/standard 
 +$ sudo cp database* hash.k2d inspect.txt opts.k2d seqid2taxid.map taxo.k2d /export/data/bio/kraken2/db/standard</code>
  
 The ''kraken2'' application finds these with the ''KRAKEN2_DB_PATH'' environment variable. The ''kraken2'' application finds these with the ''KRAKEN2_DB_PATH'' environment variable.
kraken-software.txt · Last modified: 2023/08/11 10:13 by aorth