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kraken-software [2019/07/15 17:04] – aorthkraken-software [2022/03/03 08:46] – aorth
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 $ wget ftp://ftp.ccb.jhu.edu/pub/data/kraken2_dbs/minikraken2_v2_8GB_201904_UPDATE.tgz $ wget ftp://ftp.ccb.jhu.edu/pub/data/kraken2_dbs/minikraken2_v2_8GB_201904_UPDATE.tgz
 $ for name in *.tgz; do sudo tar xfv "$name" -C /export/data/bio/kraken2/db; done</code> $ for name in *.tgz; do sudo tar xfv "$name" -C /export/data/bio/kraken2/db; done</code>
 +
 +Download the larger standard pre-formatted database:
 +
 +<code>$ wget https://genome-idx.s3.amazonaws.com/kraken/k2_standard_20210517.tar.gz
 +$ tar xf k2_standard_20210517.tar.gz
 +</code>
  
 The ''kraken2'' application finds these with the ''KRAKEN2_DB_PATH'' environment variable. The ''kraken2'' application finds these with the ''KRAKEN2_DB_PATH'' environment variable.
kraken-software.txt · Last modified: 2023/08/11 10:13 by aorth