ILRI Research Computing

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====== KmerGenie ======

KmerGenie estimates the best k-mer length for genome de novo assembly.

===== Information =====

  * Version: 1.7044
  * Added: February, 2017
  * Updated: May, 2017
  * Link: http://kmergenie.bx.psu.edu/

===== Usage =====

See which versions of kmergenie are available:
<code>$ module avail kmergenie</code>

Load kmergenie
<code>$ module load kmergenie/1.7044</code>

===== Installation ======

Notes from the sysadmin during installation:

<code>$ cd /tmp
$ wget http://kmergenie.bx.psu.edu/kmergenie-1.7044.tar.gz
$ tar xf kmergenie-1.7044.tar.gz
$ cd kmergenie-1.7044
$ sudo mkdir -p /export/apps/kmergenie/1.7044
$ sudo chown aorth /export/apps/kmergenie/1.7044
$ module load python/2.7.8 R/3.3.3
$ make
$ python setup.py install --prefix=/export/apps/kmergenie/1.7044
$ sudo chown -R root:root /export/apps/kmergenie/1.7044</code>