jellyfish-software
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jellyfish-software [2017/03/06 13:24] – [Installation] joguya | jellyfish-software [2020/10/28 09:20] (current) – aorth | ||
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====== Jellyfish ====== | ====== Jellyfish ====== | ||
- | Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA | + | Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA. |
===== Information ===== | ===== Information ===== | ||
- | * Latest version: 2.2.7 | + | * Latest version: 2.3.0 |
* Added: March, 2015 | * Added: March, 2015 | ||
- | * Updated: | + | * Updated: |
- | * Link: http://www.genome.umd.edu/jellyfish.html | + | * Link: https://github.com/gmarcais/ |
===== Usage ===== | ===== Usage ===== | ||
- | |||
See versions of jellyfish which are available: | See versions of jellyfish which are available: | ||
< | < | ||
- | Load and run jellyfish: | + | Load one version of jellyfish into your environment |
- | < | + | < |
$ jellyfish</ | $ jellyfish</ | ||
Line 21: | Line 20: | ||
Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
- | < | + | < |
- | $ cd /tmp | + | $ wget https:// |
- | $ wget -qO- https:// | + | $ chmod +x jellyfish-linux |
- | $ cd jellyfish-2.2.6 | + | $ sudo mkdir -p / |
- | $ sudo mkdir / | + | $ sudo cp jellyfish-linux / |
- | $ sudo chown -R joguya: | + | |
- | $ ./configure CC=clang --prefix=/ | + | |
- | $ make | + | |
- | $ make install | + | |
- | $ sudo chown -R root: | + | |
- | </ | + |
jellyfish-software.1488806679.txt.gz · Last modified: 2017/03/06 13:24 by joguya