Differences

This shows you the differences between two versions of the page.

--- jellyfish-software [2017/03/06 13:23] – joguya
+++ jellyfish-software [2020/10/28 09:20] (current) – aorth
@@ Line 1: / Line 1: @@
 ====== Jellyfish ======
-Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA
+Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA.
 ===== Information =====
-  * Latest version: 2.2.7
+  * Latest version: 2.3.0
   * Added: March, 2015
-  * Updated: March, 2017
+  * Updated: October, 2020
-  * Link: http://www.genome.umd.edu/jellyfish.html
+  * Link: https://github.com/gmarcais/Jellyfish
 ===== Usage =====
 See versions of jellyfish which are available:
 <code>$ module avail jellyfish</code>
-Load and run jellyfish:
+Load one version of jellyfish into your environment and run it:
-<code>$ module load jellyfish
+<code>$ module load jellyfish/2.3.0
 $ jellyfish</code>
@@ Line 21: / Line 20: @@
 Notes from the sysadmin during installation:
-<code>
+<code>$ cd /tmp
-$ cd /tmp
+$ wget https://github.com/gmarcais/Jellyfish/releases/download/v2.3.0/jellyfish-linux
-$ wget -qO- https://github.com/gmarcais/Jellyfish/releases/download/v2.2.6/jellyfish-2.2.6.tar.gz | tar xzv
+$ chmod +x jellyfish-linux
-$ cd jellyfish-2.2.6
+$ sudo mkdir -p /export/apps/jellyfish/2.3.0/bin
-$ sudo mkdir /export/apps/jellyfish/2.2.6
+$ sudo cp jellyfish-linux /export/apps/jellyfish/2.3.0/bin/jellyfish</code>
-$ sudo chown -R joguya:joguya /export/apps/jellyfish/2.2.6
-$ ./configure CC=clang --prefix=/export/apps/jellyfish/2.2.6
-$ make
-$ make install
-$ sudo chown root:root /export/apps/jellyfish/2.2.6
-</code>