User Tools

Site Tools


jellyfish-software

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revisionPrevious revision
Next revision
Previous revision
jellyfish-software [2015/07/28 12:16] joguyajellyfish-software [2020/10/28 09:20] (current) aorth
Line 1: Line 1:
 ====== Jellyfish ====== ====== Jellyfish ======
-Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA+Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA.
  
 ===== Information ===== ===== Information =====
  
-  * Latest version: 2.2.3+  * Latest version: 2.3.0
   * Added: March, 2015   * Added: March, 2015
-  * Updated: July2015 +  * Updated: October2020 
-  * Link: http://www.genome.umd.edu/jellyfish.html+  * Link: https://github.com/gmarcais/Jellyfish
  
 ===== Usage ===== ===== Usage =====
- 
 See versions of jellyfish which are available: See versions of jellyfish which are available:
 <code>$ module avail jellyfish</code> <code>$ module avail jellyfish</code>
  
-Load and run jellyfish+Load one version of jellyfish into your environment and run it
-<code>$ module load jellyfish+<code>$ module load jellyfish/2.3.0
 $ jellyfish</code> $ jellyfish</code>
  
Line 22: Line 21:
  
 <code>$ cd /tmp <code>$ cd /tmp
-$ wget ftp://ftp.genome.umd.edu/pub/jellyfish/jellyfish-2.2.0.tar.gz +$ wget https://github.com/gmarcais/Jellyfish/releases/download/v2.3.0/jellyfish-linux 
-$ tar -xvf jellyfish-2.2.0.tar.gz +chmod +x jellyfish-linux 
-cd jellyfish-2.2.0 +$ sudo mkdir -p /export/apps/jellyfish/2.3.0/bin 
-$ sudo mkdir -p /export/apps/jellyfish/2.2.0 +$ sudo cp jellyfish-linux /export/apps/jellyfish/2.3.0/bin/jellyfish</code>
-$ sudo chown joguya:joguya /export/apps/jellyfish/2.2.0 +
-$ scl enable devtoolset-2 bash +
-$ ./configure CC=clang --prefix=/export/apps/jellyfish/2.2.0 +
-$ make +
-$ make install +
-$ sudo chown root:root /export/apps/jellyfish/2.2.0</code>+
jellyfish-software.1438085773.txt.gz · Last modified: 2015/07/28 12:16 by joguya