Differences

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--- jellyfish-software [2015/03/27 09:19] – created joguya
+++ jellyfish-software [2017/03/06 13:23] – joguya
@@ Line 4: / Line 4: @@
 ===== Information =====
-  * Version: 2.2.0
+  * Latest version: 2.2.7
   * Added: March, 2015
+  * Updated: March, 2017
   * Link: http://www.genome.umd.edu/jellyfish.html
 ===== Usage =====
-=== See versions of jellyfish which are available ===
+See versions of jellyfish which are available:
 <code>$ module avail jellyfish</code>
-=== Load and run jellyfish ===
+Load and run jellyfish:
 <code>$ module load jellyfish
 $ jellyfish</code>
@@ Line 20: / Line 21: @@
 Notes from the sysadmin during installation:
-<code>cd /tmp
+<code>
-wget ftp://ftp.genome.umd.edu/pub/jellyfish/jellyfish-2.2.0.tar.gz
+$ cd /tmp
-tar -xvf jellyfish-2.2.0.tar.gz
+$ wget -qO- https://github.com/gmarcais/Jellyfish/releases/download/v2.2.6/jellyfish-2.2.6.tar.gz | tar xzv
-cd jellyfish-2.2.0
+$ cd jellyfish-2.2.6
-sudo mkdir -p /export/apps/jellyfish/2.2.0
+$ sudo mkdir /export/apps/jellyfish/2.2.6
-sudo chown joguya:joguya /export/apps/jellyfish/2.2.0
+$ sudo chown -R joguya:joguya /export/apps/jellyfish/2.2.6
-scl enable devtoolset-2 bash
+$ ./configure CC=clang --prefix=/export/apps/jellyfish/2.2.6
-./configure CC=clang --prefix=/export/apps/jellyfish/2.2.0
+$ make
-make
+$ make install
-make install
+$ sudo chown root:root /export/apps/jellyfish/2.2.6
-sudo chown root:root /export/apps/jellyfish/2.2.0
 </code>