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jellyfish-software [2015/03/27 09:19] – created joguyajellyfish-software [2015/06/09 16:34] aorth
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 ===== Usage ===== ===== Usage =====
  
-=== See versions of jellyfish which are available ===+See versions of jellyfish which are available:
 <code>$ module avail jellyfish</code> <code>$ module avail jellyfish</code>
  
-=== Load and run jellyfish ===+Load and run jellyfish:
 <code>$ module load jellyfish <code>$ module load jellyfish
 $ jellyfish</code> $ jellyfish</code>
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 Notes from the sysadmin during installation: Notes from the sysadmin during installation:
  
-<code>cd /tmp +<code>cd /tmp 
-wget ftp://ftp.genome.umd.edu/pub/jellyfish/jellyfish-2.2.0.tar.gz +wget ftp://ftp.genome.umd.edu/pub/jellyfish/jellyfish-2.2.0.tar.gz 
-tar -xvf jellyfish-2.2.0.tar.gz +tar -xvf jellyfish-2.2.0.tar.gz 
-cd jellyfish-2.2.0 +cd jellyfish-2.2.0 
-sudo mkdir -p /export/apps/jellyfish/2.2.0 +sudo mkdir -p /export/apps/jellyfish/2.2.0 
-sudo chown joguya:joguya /export/apps/jellyfish/2.2.0 +sudo chown joguya:joguya /export/apps/jellyfish/2.2.0 
-scl enable devtoolset-2 bash +scl enable devtoolset-2 bash 
-./configure CC=clang --prefix=/export/apps/jellyfish/2.2.0 +./configure CC=clang --prefix=/export/apps/jellyfish/2.2.0 
-make +make 
-make install +make install 
-sudo chown root:root /export/apps/jellyfish/2.2.0 +sudo chown root:root /export/apps/jellyfish/2.2.0</code>
-</code> +
jellyfish-software.txt · Last modified: 2020/10/28 09:20 by aorth