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--- interproscan [2011/07/21 07:26] – aorth
+++ interproscan [2011/07/21 10:27] (current) – aorth
@@ Line 76: / Line 76: @@
 cd /export/apps/iprscan/4.8
 ./Config.pl</code>
+Wait a sec while it formats the databases...
+==== Testing ====
+<code>/export/apps/iprscan/4.8/bin/iprscan -cli -i /export/apps/iprscan/4.8/test.seq -o /tmp/iprscan_test.out -format raw -goterms -iprlookup</code>
+==== Apache config ====
+Paste the following in ///etc/httpd/conf.d/iprscan.conf//:
+<file> Alias /doc/ "/export/apps/iprscan/4.8/doc/html/"
+ Alias /images/ "/export/apps/iprscan/4.8/images/"
+ Alias /tmp/ "/export/apps/iprscan/4.8/tmp/"
+ ScriptAlias /iprscan/ "/export/apps/iprscan/4.8/bin/"
+ <Directory "/export/apps/iprscan/4.8/images">
+   Options Indexes MultiViews
+   AllowOverride None
+   Order allow,deny
+   Allow from all
+ </Directory>
+ <Directory "/export/apps/iprscan/4.8/tmp/">
+   Options FollowSymLinks Includes SymLinksIfOwnerMatch
+    IndexIgnore */.??* *~ *# */HEADER* */README* */RCS
+    AllowOverride AuthConfig Limit FileInfo
+    Order deny,allow
+    Deny from all
+    Allow from .ilri.cgiar.org
+ </Directory></file>
+And then restart Apache with ''sudo apachectl graceful''.
+=== Apache write permissions ===
+Make sure Apache can write to the iprscan folder!
+<code>sudo chown -R apache /export/apps/iprscan/4.8/</code>