interproscan
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interproscan [2010/05/05 08:06] – 172.26.15.75 | interproscan [2011/07/21 07:49] – aorth | ||
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===== Interproscan ===== | ===== Interproscan ===== | ||
- | Change EBI logo to ILRI logo on wait page? | + | Official FTP: ftp://ftp.ebi.ac.uk/pub/ |
- | + | ||
- | + | ||
- | http://hpc.ilri.cgiar.org/iprscan/iprscan | + | |
===== Installation ===== | ===== Installation ===== | ||
Line 52: | Line 49: | ||
exit;</ | exit;</ | ||
- | Run it on a node like this: | + | If it is successful you should not see any output. |
- | < | + | |
+ | List all perl modules available in yum: | ||
+ | < | ||
+ | |||
+ | ==== Getting the files ==== | ||
+ | iprscan will unzip into its own folder, so you don't need to create one to hold all these files. | ||
+ | < | ||
+ | wget ftp:// | ||
+ | wget ftp:// | ||
+ | wget ftp:// | ||
+ | wget ftp:// | ||
</ | </ | ||
- | If it is successful you should not see any output. | ||
- | ==== Accessing Interproscan | + | ==== Unzipping |
- | http://hpc.ilri.cgiar.org/ | + | < |
+ | tar zxf iprscan_DATA_33.0.tar.gz | ||
+ | tar zxf iprscan_MATCH_DATA_33.0.tar.gz | ||
+ | tar zxf iprscan_PTHR_DATA_31.0.tar.gz | ||
+ | tar zxf iprscan_v4.8.tar.gz</ | ||
+ | |||
+ | ==== Configuration ==== | ||
+ | Create the destination directory and move the unzipped '' | ||
+ | < | ||
+ | sudo mv iprscan / | ||
+ | cd / | ||
+ | ./ | ||
+ | Wait a sec while it formats the databases... | ||
+ | === Apache config ==== | ||
+ | Paste the following in /// | ||
+ | < | ||
+ | Alias /images/ "/ | ||
+ | Alias /tmp/ "/ | ||
+ | |||
+ | | ||
+ | |||
+ | < | ||
+ | | ||
+ | | ||
+ | Order allow, | ||
+ | Allow from all | ||
+ | </ | ||
+ | |||
+ | < | ||
+ | | ||
+ | IndexIgnore */.??* *~ *# */HEADER* */README* */RCS | ||
+ | AllowOverride AuthConfig Limit FileInfo | ||
+ | Order deny,allow | ||
+ | Deny from all | ||
+ | Allow from .ilri.cgiar.org | ||
+ | </ | ||
+ | And then restart Apache with '' |
interproscan.txt · Last modified: 2011/07/21 10:27 by aorth