Differences

This shows you the differences between two versions of the page.

--- interproscan [2009/11/09 08:34] – 172.26.0.166
+++ interproscan [2011/07/20 08:19] – aorth
@@ Line 1: / Line 1: @@
 ===== Interproscan =====
-Check configuration to use LSF.
-Download and install lates databases.
+Change EBI logo to ILRI logo on wait page?
-Change EBI logo to ILRI logo on wait page.
+http://hpc.ilri.cgiar.org/iprscan/iprscan
 ===== Installation =====
@@ Line 30: / Line 30: @@
   * URI::Escape
   * IO::String</file>
+Here is a script you can use to test if these modules are working on a particular node:
+<file>#!/usr/bin/perl
+use DB_File;
+use XML::Parser;
+use XML::Quote;
+use English;
+use File::Basename;
+use File::Copy;
+use File::Path;
+use File::Spec::Functions;
+use Sys::Hostname;
+use Mail::Send;
+use FileHandle;
+use IO::Scalar;
+use CGI;
+use URI::Escape;
+use IO::String;
+use Bio::Perl;
+exit;</file>
+If it is successful you should not see any output.  Otherwise, you will have to install missing perl modules.  If you need to install perl modules you should probably check the system's package manager first, as that way the system will keep track of when there are updates, etc, as opposed to simply using CPAN or installing them manually.
+List all perl modules available in yum:
+<code>yum list perl-</code>
+===== Accessing Interproscan =====
+http://hpc.ilri.cgiar.org/iprscan/iprscan