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--- installing_gbrowse2 [2012/02/14 13:54] – ikahugu
+++ installing_gbrowse2 [2012/02/14 14:11] – ikahugu
@@ Line 1: / Line 1: @@
 . Install prerequisites
 [[http://gmod.org/wiki/GBrowse_2.0_Prerequisites]]
+<code>
+sudo perl -MCPAN -e 'install Math::BigInt::Pari'
+sudo perl -MCPAN -e 'install Digest::SHA'
+sudo perl -MCPAN -e 'install Crypt::SSLeay'
+sudo perl -MCPAN -e 'install Net::OpenID::Consumer'
+sudo perl -MCPAN -e 'install Net::SMTP::SSL'
+sudo perl -MCPAN -e 'install Authen::SASL'
+</code>
 .Install automatically using CPAN shell
@@ Line 20: / Line 29: @@
 </code>
-.
+.Edit the following lines in /etc/gbrowse2/GBrowse.conf
+<code>
+upload_db_adaptor = DBI::mysql
+upload_db_host    = localhost
+upload_db_user    = gbrowse
+upload_db_pass    = secret</code>
+. Create gbrowse user in mysql
+<code>
+GRANT USAGE ON *.* TO 'gbrowse'@'localhost' IDENTIFIED BY PASSWORD 'secret'
+GRANT ALL PRIVILEGES ON `userdata\_%`.* TO 'gbrowse'@'localhost'
+GRANT ALL PRIVILEGES ON `gbrowse_login`.* TO 'gbrowse'@'localhost'
+GRANT ALL PRIVILEGES ON `gbrowse_login`.`gbrowse_login` TO 'gbrowse'@'localhost'
+</code>
+. Create gbrowse user
+<code>
+sudo -u apache gbrowse_create_account.pl gbrowse
+New password for gbrowse:
+New password for gbrowse (confirm):
+Enter user's full name (optional):
+Enter user's email address (optional): i.kahugu@cgiar.org
+Account "gbrowse": password successfully set.
+</code>
+. Load Meta data to db
+<code>
+/usr/bin/gbrowse_metadb_config.pl -admin gbrowse:secret
+</code>
+. Set admin account
+<code>gbrowse_set_admin_passwd.pl
+</code>
+. Setup email forwarding
+**Edit the necessary lines on /etc/gbrowse2/GBrowse.conf**
+<code>
+# here are some common options
+# smtp_gateway         = localhost                                 # localhost has properly configured outgoing gateway
+#smtp_gateway         = 172.26.0.222                        # indicated machine will forward email for you
+smtp_gateway         = smtp.gmail.com:465:ssl:gbrowsehpc:secret   # use gmail with account "joe.user" and password "secret"
+# smtp_gateway         = none                                      # disable outgoing email
+#smtp_gateway           = none  # disable outgoing email
+
+# These values are used in the login confirmation message sent during
+# user registration. You may customize
+application_name       = GBrowse
+application_name_long  = The Generic Genome Browser
+email_address          = gbrowsehpc@gmail.com
+</code>
+. Start gbrowse
+<code>
+http://hpc.ilri.cgiar.org/gbrowse2/</code>