ILRI Research Computing

This page is read only. You can view the source, but not change it. Ask your administrator if you think this is wrong.

====== Integrative Genomics Viewer (IGV) Tools ======
Integrative Genomics Viewer (IGV) is a high-performance visualization tool for interactive exploration of large, integrated genomic datasets.

===== Information =====

  * Latest Version: 2.3.98
  * Updated: December, 2017
  * Link: https://software.broadinstitute.org/software/igv

===== Usage =====
See which versions of igvtools are available:
<code>$ module avail igvtools</code>

Load one version into your environment and run it:
<code>$ module load igvtools/2.3.98
$ igvtools</code>

===== Installation ======
Notes from the sysadmin during installation:

<code>$ wget http://data.broadinstitute.org/igv/projects/downloads/2.3/igvtools_2.3.98.zip
$ unzip igvtools_2.3.98.zip
$ sudo mkdir -p /export/apps/igvtools/2.3.98
$ sudo cp -r IGVTools/* /export/apps/igvtools/2.3.98
$ sudo chmod -x /export/apps/igvtools/2.3.98/*.bat /export/apps/igvtools/2.3.98/*.command</code>