ILRI Research Computing

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====== Integrative Genomics Viewer (IGV) ======
Integrative Genomics Viewer (IGV) is a high-performance visualization tool for interactive exploration of large, integrated genomic datasets.
===== Information =====

  * Latest Version: 2.4.5
  * Added: June, 2014
  * Updated: February, 2017
  * Link: https://software.broadinstitute.org/software/igv

===== Usage =====

See which versions of IGV are available:
<code>$ module avail igv</code>

Load one version into your environment and run it:
<code>$ module load igv/2.4.5
$ igv.sh</code>

===== Installation ======
Notes from the sysadmin during installation:

<code>$ wget http://data.broadinstitute.org/igv/projects/downloads/2.4/IGV_2.4.5.zip
$ sudo mkdir -p /export/apps/igv/2.4.5
$ sudo cp -r IGV_2.4.5/*  /export/apps/igv/2.4.5
$ sudo chmod -x /export/apps/igv/2.4.5/igv.{bat,command}</code>