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--- igdiscover-software [2020/04/16 14:26] – created aorth
+++ igdiscover-software [2020/04/16 14:38] (current) – aorth
@@ Line 17: / Line 17: @@
 <code>$ module load igdiscover/0.12.3
 $ igdiscover --help</code>
+Note: parts of the IgDiscover pipeline seem to use all the CPUs on the current host with no option to control the number of parallel threads. If you know how to limit this please write to me so I can update this note!
 ===== Installation ======
@@ Line 32: / Line 34: @@
 $ sudo chown -R root:root /export/apps/igdiscover/0.12.3
 </code>
+Run the [[http://docs.igdiscover.se/en/stable/testing.html#test|test data]]:
+<code>$ module load igdiscover/0.12.3
+$ cd /tmp
+$ wget https://bitbucket.org/igdiscover/testdata/downloads/igdiscover-testdata-0.5.tar.gz
+$ tar xvf igdiscover-testdata-0.5.tar.gz
+$ igdiscover init --db igdiscover-testdata/database/ --reads igdiscover-testdata/reads.1.fastq.gz discovertest
+$ cd discovertest && igdiscover run</code>