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htslib-software [2017/02/05 11:40] joguyahtslib-software [2022/06/23 09:29] (current) aorth
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 ===== Information ===== ===== Information =====
  
-  * Latest Version: 1.3.2+  * Latest Version: 1.15.1
   * Added: March, 2015   * Added: March, 2015
-  * Updated: February2017+  * Updated: June2022
   * Link: https://github.com/samtools/htslib   * Link: https://github.com/samtools/htslib
  
 ===== Usage ===== ===== Usage =====
  
-=== See versions of htslib which are available ===+See versions which are available:
 <code>$ module avail htslib</code> <code>$ module avail htslib</code>
  
-=== Load and run htslib === +Load one version into your environment and run it: 
-<code>$ module load htslib/1.3.</code>+<code>$ module load htslib/1.15.
 +$ tabix 
 +$ bgzip</code>
  
 ===== Installation ====== ===== Installation ======
 Notes from the sysadmin during installation: Notes from the sysadmin during installation:
  
-<code>cd /tmp +<code>cd /tmp 
-$ wget -qO- "https://github.com/samtools/htslib/releases/download/1.3.2/htslib-1.3.2.tar.bz2" | tar xjv +$ wget https://github.com/samtools/htslib/releases/download/1.15.1/htslib-1.15.1.tar.bz2 
-sudo mkdir /export/apps/htslib/1.3.2/ +tar xf htslib-1.15.1.tar.bz2 
-$ sudo chown -R joguya:joguya /export/apps/htslib/1.3.2/ +cd htslib-1.15.1 
-LD_LIBRARY_PATH=/export/apps/curl/7.47.1/lib:$LD_LIBRARY_PATH LDFLAGS="-L/export/apps/curl/7.47.1/lib" CFLAGS="-I/export/apps/curl/7.47.1/include" ./configure --enable-plugins --enable-libcurl --prefix=/export/apps/htslib/1.3.2/+./configure --enable-plugins --enable-libcurl --prefix=/export/apps/htslib/1.15.1
 $ make $ make
 +$ sudo mkdir -p /export/apps/htslib/1.15.1
 +$ sudo chown aorth /export/apps/htslib/1.15.1
 $ make install $ make install
-$ sudo chown -R root:root /export/apps/htslib/1.3.+$ sudo chown -R root:root /export/apps/htslib/1.15.1</code> 
-</code>+ 
 +Note: as of 1.15.1 this was compiled on CentOS Stream 8
htslib-software.1486294858.txt.gz · Last modified: 2017/02/05 11:40 by joguya