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htslib-software [2021/01/06 09:16] aorthhtslib-software [2022/06/23 09:29] (current) aorth
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 ===== Information ===== ===== Information =====
  
-  * Latest Version: 1.11+  * Latest Version: 1.15.1
   * Added: March, 2015   * Added: March, 2015
-  * Updated: January2021+  * Updated: June2022
   * Link: https://github.com/samtools/htslib   * Link: https://github.com/samtools/htslib
  
 ===== Usage ===== ===== Usage =====
  
-See versions of htslib which are available:+See versions which are available:
 <code>$ module avail htslib</code> <code>$ module avail htslib</code>
  
-Load one version into your environment and run some common commands+Load one version into your environment and run it
-<code>$ module load htslib/1.11+<code>$ module load htslib/1.15.1
 $ tabix $ tabix
 $ bgzip</code> $ bgzip</code>
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 Notes from the sysadmin during installation: Notes from the sysadmin during installation:
  
-<code>$ cd /tmp/ +<code>$ cd /tmp 
-$ wget https://github.com/samtools/htslib/releases/download/1.11/htslib-1.11.tar.bz2 +$ wget https://github.com/samtools/htslib/releases/download/1.15.1/htslib-1.15.1.tar.bz2 
-$ tar xf htslib-1.11.tar.bz2 +$ tar xf htslib-1.15.1.tar.bz2 
-$ cd htslib-1.11 +$ cd htslib-1.15.1 
-$ ./configure --enable-plugins --enable-libcurl --prefix=/export/apps/htslib/1.11+$ ./configure --enable-plugins --enable-libcurl --prefix=/export/apps/htslib/1.15.1
 $ make $ make
-$ sudo mkdir -p /export/apps/htslib/1.11 +$ sudo mkdir -p /export/apps/htslib/1.15.1 
-$ sudo chown aorth /export/apps/htslib/1.11+$ sudo chown aorth /export/apps/htslib/1.15.1
 $ make install $ make install
-$ sudo chown -R root:root /export/apps/htslib/1.11</code>+$ sudo chown -R root:root /export/apps/htslib/1.15.1</code> 
 + 
 +Note: as of 1.15.1 this was compiled on CentOS Stream 8
htslib-software.txt · Last modified: 2022/06/23 09:29 by aorth