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htslib-software [2018/06/01 18:52] aorthhtslib-software [2022/06/23 09:29] (current) aorth
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 ===== Information ===== ===== Information =====
  
-  * Latest Version: 1.8+  * Latest Version: 1.15.1
   * Added: March, 2015   * Added: March, 2015
-  * Updated: June, 2018+  * Updated: June, 2022
   * Link: https://github.com/samtools/htslib   * Link: https://github.com/samtools/htslib
  
 ===== Usage ===== ===== Usage =====
  
-See versions of htslib which are available:+See versions which are available:
 <code>$ module avail htslib</code> <code>$ module avail htslib</code>
  
-Load one version into your environment: +Load one version into your environment and run it
-<code>$ module load htslib/1.8</code>+<code>$ module load htslib/1.15.1 
 +$ tabix 
 +$ bgzip</code>
  
 ===== Installation ====== ===== Installation ======
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 <code>$ cd /tmp <code>$ cd /tmp
-$ wget https://github.com/samtools/htslib/releases/download/1.8/htslib-1.8.tar.bz2 +$ wget https://github.com/samtools/htslib/releases/download/1.15.1/htslib-1.15.1.tar.bz2 
-$ tar xf htslib-1.8.tar.bz2  +$ tar xf htslib-1.15.1.tar.bz2 
-$ cd htslib-1.8 +$ cd htslib-1.15.1 
-$ ./configure --enable-plugins --enable-libcurl --prefix=/export/apps/htslib/1.8+$ ./configure --enable-plugins --enable-libcurl --prefix=/export/apps/htslib/1.15.1
 $ make $ make
-$ sudo mkdir /export/apps/htslib/1.8 +$ sudo mkdir -p /export/apps/htslib/1.15.1 
-$ sudo chown aorth:aorth /export/apps/htslib/1.8+$ sudo chown aorth /export/apps/htslib/1.15.1
 $ make install $ make install
-$ sudo chown -R root:root /export/apps/htslib/1.8</code>+$ sudo chown -R root:root /export/apps/htslib/1.15.1</code> 
 + 
 +Note: as of 1.15.1 this was compiled on CentOS Stream 8
htslib-software.txt · Last modified: 2022/06/23 09:29 by aorth