htseq-software
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htseq-software [2015/02/23 14:07] – created aorth | htseq-software [2017/09/20 12:15] (current) – [Installation] aorth | ||
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===== Information ===== | ===== Information ===== | ||
- | * Version: 0.6.1 | + | * Version: 0.9.1 |
* Added: October, 2013 | * Added: October, 2013 | ||
- | * Updated: | + | * Updated: |
- | * Link: http://www-huber.embl.de/ | + | * Link: http://htseq.readthedocs.io |
===== Usage ===== | ===== Usage ===== | ||
- | === See versions of htseq which are available | + | See versions of htseq which are available: |
- | < | + | < |
+ | |||
+ | Load one version into your environment: | ||
+ | < | ||
===== Installation ====== | ===== Installation ====== | ||
Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
- | < | + | < |
- | $ module load python/2.7.8 | + | $ sudo mkdir -p / |
- | $ sudo chown aorth / | + | $ sudo chown aorth /export/ |
- | $ pip install HTSeq --install-option=" | + | $ python -m venv / |
- | $ sudo chown root:root / | + | $ . / |
+ | $ pip install HTSeq | ||
+ | $ pip install matplotlib | ||
+ | $ sudo chown -R root:root / | ||
+ | |||
+ | Installation is greatly simplified by using Python 3's built-in '' |
htseq-software.1424700459.txt.gz · Last modified: 2015/02/23 14:07 by aorth