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--- htseq-software [2017/09/20 08:36] – Update docs link aorth
+++ htseq-software [2017/09/20 12:15] (current) – [Installation] aorth
@@ Line 4: / Line 4: @@
 ===== Information =====
-  * Version: 0.6.1
+  * Version: 0.9.1
   * Added: October, 2013
-  * Updated: February, 2015
+  * Updated: September, 2017
-  * Link: http://htseq.readthedocs.io/en/release_0.9.1/
+  * Link: http://htseq.readthedocs.io
 ===== Usage =====
-=== See versions of htseq which are available ===
+See versions of htseq which are available:
-<code>module avail htseq</code>
+<code>$ module avail htseq</code>
+Load one version into your environment:
+<code>$ module load htseq/0.9.1</code>
 ===== Installation ======
 Notes from the sysadmin during installation:
-<code>$ sudo mkdir -p /export/apps/htseq/0.6.1
+<code>$ module load python/3.6.2
-$ module load python/2.7.8
+$ sudo mkdir -p /export/apps/htseq/0.9.1
-$ sudo chown aorth /export/apps/htseq/0.6.1
+$ sudo chown aorth /export/apps/htseq/0.9.1
-$ pip install HTSeq --install-option="--prefix=/export/apps/htseq/0.6.1"
+$ python -m venv /export/apps/htseq/0.9.1
-$ sudo chown root:root /export/apps/htseq/0.6.1</code>
+$ . /export/apps/htseq/0.9.1/bin/activate
+$ pip install HTSeq
+$ pip install matplotlib
+$ sudo chown -R root:root /export/apps/htseq/0.9.1</code>
+Installation is greatly simplified by using Python 3's built-in ''venv'' module to create a dedicated environment, then use standard pip etc to install HTSeq and its dependencies.