ILRI Research Computing

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====== hmmIBD ======

A hidden Markov model for detecting segments of shared ancestry (identity by descent) in genetic sequence data.

===== Information =====

  * Version: 2.0.4
  * Added: May, 2021
  * Link: https://github.com/glipsnort/hmmIBD

===== Usage =====

See which versions of hmmIBD are available:
<code>$ module avail hmmIBD</code>

Load one version of hmmIBD into your environment and run it:
<code>$ module load hmmIBD/2.0.4</code>

===== Installation ======

Notes from the sysadmin during installation:

<code>$ cd /tmp
$ git clone https://github.com/glipsnort/hmmIBD.git -b v2.0.4
$ cd hmmIBD
$ scl enable devtoolset-7 bash
$ cc -o hmmIBD -O3 -lm -Wall hmmIBD.c
$ sudo mkdir -p /export/apps/hmmIBD/2.0.4/bin
$ sudo cp hmmIBD /export/apps/hmmIBD/2.0.4/bin
$ sudo cp -r LICENSE README.md samp_data /export/apps/hmmIBD/2.0.4</code>