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hmmibd-software [2021/05/05 13:08] (current)
aorth created
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 +====== hmmIBD ======
  
 +A hidden Markov model for detecting segments of shared ancestry (identity by descent) in genetic sequence data.
 +
 +===== Information =====
 +
 +  * Version: 2.0.4
 +  * Added: May, 2021
 +  * Link: https://github.com/glipsnort/hmmIBD
 +
 +===== Usage =====
 +
 +See which versions of hmmIBD are available:
 +<code>$ module avail hmmIBD</code>
 +
 +Load one version of hmmIBD into your environment and run it:
 +<code>$ module load hmmIBD/2.0.4</code>
 +
 +===== Installation ======
 +
 +Notes from the sysadmin during installation:
 +
 +<code>$ cd /tmp
 +$ git clone https://github.com/glipsnort/hmmIBD.git -b v2.0.4
 +$ cd hmmIBD
 +$ scl enable devtoolset-7 bash
 +$ cc -o hmmIBD -O3 -lm -Wall hmmIBD.c
 +$ sudo mkdir -p /export/apps/hmmIBD/2.0.4/bin
 +$ sudo cp hmmIBD /export/apps/hmmIBD/2.0.4/bin
 +$ sudo cp -r LICENSE README.md samp_data /export/apps/hmmIBD/2.0.4</code>
hmmibd-software.txt · Last modified: 2021/05/05 13:08 by aorth