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hdf5-software [2015/06/08 09:43] – aorthhdf5-software [2017/09/28 10:34] – [Installation] aorth
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 HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data. The HDF5 Technology suite includes tools and applications for managing, manipulating, viewing, and analyzing data in the HDF5 format. HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data. The HDF5 Technology suite includes tools and applications for managing, manipulating, viewing, and analyzing data in the HDF5 format.
  
-==== Information ==== +===== Information ===== 
-  * Version: 1.8.15-patch1+  * Version: 1.8.19
   * Added: December, 2014   * Added: December, 2014
-  * Updated: June, 2015+  * Updated: September, 2017
   * Link: http://www.hdfgroup.org/HDF5/   * Link: http://www.hdfgroup.org/HDF5/
  
-=== Usage === +===== Usage ===== 
-See versions of htseq which are available:+See versions of hdf5 which are available:
  
 <code>$ module avail hdf5</code> <code>$ module avail hdf5</code>
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 Load a particular version: Load a particular version:
  
-<code>$ module load hdf5/1.8.15-patch1</code>+<code>$ module load hdf5/1.8.19</code>
  
 List contents of an archive: List contents of an archive:
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 <code>$ h5dump -d /MultiPart/Parts file_s1_p0.bas.h5</code> <code>$ h5dump -d /MultiPart/Parts file_s1_p0.bas.h5</code>
  
-=== Installation ===+===== Installation =====
 Notes from the sysadmin during installation: Notes from the sysadmin during installation:
  
 <code>$ cd /tmp <code>$ cd /tmp
-$ wget http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.15-patch1.tar.gz +$ wget https://support.hdfgroup.org/ftp/HDF5/current18/src/hdf5-1.8.19.tar.gz 
-$ tar xf hdf5-1.8.15-patch1.tar.gz +$ tar xf hdf5-1.8.19.tar.gz 
-$ scl enable devtoolset-2 bash +$ cd hdf5-1.8.19 
-$ ./configure --prefix=/export/apps/hdf5/1.8.15-patch1 +$ scl enable devtoolset-4 bash 
-$ sudo mkdir -p /export/apps/hdf5/1.8.15-patch1 +$ ./configure --prefix=/export/apps/hdf5/1.8.19 --enable-production --enable-cxx 
-$ sudo chown aorth /export/apps/hdf5/1.8.15-patch1+$ make 
 +$ make check 
 +$ sudo mkdir -p /export/apps/hdf5/1.8.19 
 +$ sudo chown aorth /export/apps/hdf5/1.8.19
 $ make install $ make install
-$ sudo chown -R root /export/apps/hdf5/1.8.15-patch1</code>+$ sudo chown -R root /export/apps/hdf5/1.8.19</code> 
 + 
 +Note that the ''--enable-cxx'' option to configure is important as it enables the installation of the C++ header files that other programs can use.
hdf5-software.txt · Last modified: 2017/09/28 10:35 by aorth