ILRI Research Computing

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====== hapflk ======
hapflk is a software implementing the hapFLK and FLK tests for the detection of selection signatures based on multiple population genotyping data.

===== Information =====

  * Version: 1.4
  * Added: October, 2017
  * Link: https://forge-dga.jouy.inra.fr/projects/hapflk

===== Usage =====

See versions of hapflk which are available:
<code>$ module avail hapflk</code>

Load one version into your environment and run it:
<code>$ module load hapflk/1.4
$ hapflk --help</code>

===== Installation ======
Notes from the sysadmin during installation:

<code>$ cd /tmp
$ sudo mkdir -p /export/apps/hapflk/1.4
$ sudo chown aorth /export/apps/hapflk/1.4
$ module load python/2.7.13
$ python -m virtualenv /export/apps/hapflk/1.4
$ . /export/apps/hapflk/1.4/bin/activate
$ pip install numpy scipy
$ pip install hapflk
$ sudo chown -R root:root /export/apps/hapflk/1.4</code>