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--- guppy-software [2022/05/24 12:00] – aorth
+++ guppy-software [2022/11/24 07:01] – aorth
@@ Line 6: / Line 6: @@
 ===== Information =====
-  * Version: 6.0.1
+  * Version: 6.4.2
   * Added: July, 2021
-  * Updated: May, 2022
+  * Updated: November, 2022
-  * Models: /export/apps/guppy/6.0.1/data
-  * Link: https://community.nanoporetech.com/downloads/guppy/release_notes
-  * Version check: https://hub.docker.com/r/genomicpariscentre/guppy-gpu/tags
 ===== Usage =====
+Guppy is only available on compute06 because this is the only node that has a GPU.
-See versions that are available:
+//Note: guppy ships with some pre-configured models that set many basecalling parameters to sensible defaults. Please consult: /opt/ont/guppy/data.//
-<code>$ module avail guppy</code>
+===== Installation ======
-Load one version into your environment and run it:
-<code>$ module load guppy/6.0.11</code>
-//Note: guppy ships with some pre-configured models that set many basecalling parameters to sensible defaults. Please consult: /export/apps/guppy/6.0.1/data.
-//
-===== Installation ======
 Notes from the sysadmin during installation.
-<code>$ cd /tmp
+<code>$ sudo dnf install https://cdn.oxfordnanoportal.com/software/analysis/ont-guppy-6.4.2-1.el8.x86_64.rpm</code>
-$ wget https://mirror.oxfordnanoportal.com/software/analysis/ont-guppy_6.0.1_linux64.tar.gz
-$ sudo cp -r ont-guppy /export/apps/guppy/6.0.1</code>
 Run some test data using fourteen CPUs:
@@ Line 42: / Line 32: @@
 Run some test data using a GPU (currently only on compute06):
-<code>$ module load guppy/6.0.1
+<code>$ srun --gres=gpu:v100:1 --partition=batch -w compute06 -n 1 -J guppy --pty bash
-$ srun --gres=gpu:v100:1 --partition=batch -w compute06 -n 1 -J guppy --pty bash
 $ guppy_basecaller --device "cuda:0" --compress_fastq -i data/fast5_tiny/ -s data/basecall_tiny/ -c dna_r9.4.1_450bps_hac.cfg
 ...
 Caller time: 4366 ms, Samples called: 27619692, samples/s: 6.32609e+06</code>