guppy-software
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guppy-software [2022/05/24 10:00] – aorth | guppy-software [2022/07/07 17:52] – aorth | ||
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===== Information ===== | ===== Information ===== | ||
- | * Version: 6.0.1 | + | * Version: 6.2.1 |
* Added: July, 2021 | * Added: July, 2021 | ||
- | * Updated: | + | * Updated: |
- | * Models: / | + | |
- | * Link: https:// | + | |
- | * Version check: https:// | + | |
===== Usage ===== | ===== Usage ===== | ||
+ | Guppy is only available on compute06 because this is the only node that has a GPU. | ||
- | See versions | + | //Note: guppy ships with some pre-configured models |
- | < | + | ===== Installation ====== |
- | Load one version into your environment and run it: | ||
- | < | ||
- | |||
- | //Note: guppy ships with some pre-configured models that set many basecalling parameters to sensible defaults. Please consult: / | ||
- | // | ||
- | ===== Installation ====== | ||
Notes from the sysadmin during installation. | Notes from the sysadmin during installation. | ||
- | < | + | < |
- | $ wget https://mirror.oxfordnanoportal.com/ | + | |
- | $ sudo cp -r ont-guppy / | + | |
Run some test data using fourteen CPUs: | Run some test data using fourteen CPUs: | ||
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Run some test data using a GPU (currently only on compute06): | Run some test data using a GPU (currently only on compute06): | ||
- | < | + | < |
+ | $ guppy_basecaller --device " | ||
... | ... | ||
Caller time: 4366 ms, Samples called: 27619692, samples/s: 6.32609e+06</ | Caller time: 4366 ms, Samples called: 27619692, samples/s: 6.32609e+06</ |
guppy-software.txt · Last modified: 2023/12/06 06:42 by aorth