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guppy-software [2022/05/24 10:00] – aorthguppy-software [2022/07/07 11:14] – aorth
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 Load one version into your environment and run it: Load one version into your environment and run it:
-<code>$ module load guppy/6.0.11</code>+<code>$ module load guppy/6.0.1</code>
  
 //Note: guppy ships with some pre-configured models that set many basecalling parameters to sensible defaults. Please consult: /export/apps/guppy/6.0.1/data. //Note: guppy ships with some pre-configured models that set many basecalling parameters to sensible defaults. Please consult: /export/apps/guppy/6.0.1/data.
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 Run some test data using a GPU (currently only on compute06): Run some test data using a GPU (currently only on compute06):
  
-<code>$ guppy_basecaller --device "cuda:0" --compress_fastq -i data/fast5_tiny/ -s /var/scratch/aorthdata/basecall_tiny/ -c dna_r9.4.1_450bps_hac.cfg+<code>$ module load guppy/6.0.1 
 +$ srun --gres=gpu:v100:1 --partition=batch -w compute06 -n 1 -J guppy --pty bash 
 +$ guppy_basecaller --device "cuda:0" --compress_fastq -i data/fast5_tiny/ -s data/basecall_tiny/ -c dna_r9.4.1_450bps_hac.cfg
 ... ...
 Caller time: 4366 ms, Samples called: 27619692, samples/s: 6.32609e+06</code> Caller time: 4366 ms, Samples called: 27619692, samples/s: 6.32609e+06</code>
guppy-software.txt · Last modified: 2023/12/06 06:42 by aorth