guppy-software
Differences
This shows you the differences between two versions of the page.
Both sides previous revisionPrevious revisionNext revision | Previous revisionNext revisionBoth sides next revision | ||
guppy-software [2022/05/24 09:00] – aorth | guppy-software [2022/05/24 12:00] – aorth | ||
---|---|---|---|
Line 32: | Line 32: | ||
Run some test data using fourteen CPUs: | Run some test data using fourteen CPUs: | ||
- | < | + | < |
- | $ mkdir -p / | + | $ cd / |
$ wget https:// | $ wget https:// | ||
- | $ tar xf Data_Group1.tar.gz | + | $ tar xf Data_Group1.tar.gz |
- | $ guppy_basecaller --compress_fastq -i / | + | $ guppy_basecaller --compress_fastq -i data/ |
... | ... | ||
- | Caller time: 208271 | + | Caller time: 3281435 |
Run some test data using a GPU (currently only on compute06): | Run some test data using a GPU (currently only on compute06): | ||
- | < | + | < |
+ | $ srun --gres=gpu: | ||
+ | $ guppy_basecaller --device " | ||
... | ... | ||
- | Caller time: 2994 ms, Samples called: 27619692, samples/ | + | Caller time: 4366 ms, Samples called: 27619692, samples/ |
guppy-software.txt · Last modified: 2023/12/06 06:42 by aorth