ILRI Research Computing

This page is read only. You can view the source, but not change it. Ask your administrator if you think this is wrong.

====== Guidance ======

Guidance is a tool for multiple sequence alignment.

===== Information =====

  * Latest Version: 2.02
  * Added: November, 2016
  * Link: http://guidance.tau.ac.il/ver2/
  
===== Usage =====

See which versions of guidance are available:
<code>$ module avail guidance
</code>

Load pagan
<code>$ module load guidance/2.02</code>

===== Installation ======

Notes from the sysadmin during installation:
<code>
$ cd /tmp
$ wget http://guidance.tau.ac.il/ver2/guidance.v2.02.tar.gz
$ tar -xvf guidance.v2.02.tar.gz 
$ scl enable devtoolset-2 bash
$ module load mafft/6.861 clustalw/2.1 muscle/3.8.31 pagan/0.61 bioperl/1.6.923
$ cd guidance.v2.02
$ make
$ find . -type f -iname '*.pl' -exec chmod 0755 {} \;
$ sudo mkdir -p /export/apps/guidance/2.02/
$ sudo rsync -av --exclude='*.o' . /export/apps/guidance/2.02/
$ find /export/apps/guidance/2.02/ -type f -iname '*.pl' -exec sed -i 's#/usr/bin/perl#/usr/bin/env perl#g' {} \;
</code>