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--- gubbins-software [2025/05/12 12:30] – created aorth
+++ gubbins-software [2025/05/12 14:02] (current) – aorth
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 ====== gubbins ======
-Augustus predicts genes in eukaryotic genomic sequences.
+Gubbins (Genealogies Unbiased By recomBinations In Nucleotide Sequences) is an algorithm that iteratively identifies loci containing elevated densities of base substitutions, which are marked as recombinations, while concurrently constructing a phylogeny based on the putative point mutations outside of these regions. Simulations demonstrate the algorithm generates highly accurate reconstructions under realistic models of short-term bacterial evolution, and can be run in only a few hours on alignments of hundreds of bacterial genome sequences.
 ===== Information =====