gtdbtk-software
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gtdbtk-software [2020/05/04 19:50] – created aorth | gtdbtk-software [2020/05/04 20:25] (current) – aorth | ||
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Load one version into your environment and run it: | Load one version into your environment and run it: | ||
- | < | + | < |
$ gtdbtk</ | $ gtdbtk</ | ||
+ | |||
+ | Note: Please use the %%--cpus%% option to specify the number of CPUs to use in your workflow. This should match the number of CPUs requested in your SLURM SBATCH script. | ||
===== Installation ====== | ===== Installation ====== | ||
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$ source / | $ source / | ||
$ pip install --upgrade pip setuptools | $ pip install --upgrade pip setuptools | ||
- | $ pip install gtdbtk</ | + | $ pip install gtdbtk |
+ | $ sudo chown -R root:root / | ||
Download the reference data: | Download the reference data: | ||
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< | < | ||
$ sudo mkdir -p / | $ sudo mkdir -p / | ||
- | $ sudo tar xf gtdbtk_r89_data.tar.gz -C / | + | $ sudo tar xf gtdbtk_r89_data.tar.gz -C / |
+ | $ sudo find / | ||
+ | $ sudo find / |
gtdbtk-software.1588621835.txt.gz · Last modified: 2020/05/04 19:50 by aorth